UHGV-0166791

Genome information

Genome length 28,007 bps

CDS count 50

Completeness 79.88% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166791
vOTU ID	vOTU-022343
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_553583
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.82
Jumbo phage	No

Genome content
Genome length	28,007 bps
GC content	41.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.17%
Average CDS length	534.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166791_1	UniRef90	UniRef90_UPI0011868A0C	acyl carrier protein	NA
UHGV-0166791_1	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0166791_1	Structural annotation	PF14301	NA	NA
UHGV-0166791_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0166791_3	PHROG	phrog_14030	NA	unknown function
UHGV-0166791_3	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0166791_3	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0166791_3	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0166791_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0166791_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0166791_3	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0166791_4	PHROG	phrog_13289	tail protein	tail
UHGV-0166791_4	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0166791_4	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0166791_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166791_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0166791_4	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0166791_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0166791_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0166791_5	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0166791_5	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0166791_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0166791_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0166791_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0166791_6	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0166791_6	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0166791_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0166791_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0166791_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0166791_9	PHROG	phrog_88	major tail protein	tail
UHGV-0166791_9	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0166791_9	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0166791_9	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0166791_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0166791_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0166791_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0166791_10	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0166791_10	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0166791_11	Structural annotation	PF05657	NA	NA
UHGV-0166791_12	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0166791_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0166791_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0166791_14	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0166791_14	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0166791_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0166791_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0166791_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0166791_14	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0166791_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0166791_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0166791_15	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0166791_15	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0166791_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0166791_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0166791_15	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0166791_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0166791_16	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0166791_16	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0166791_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0166791_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0166791_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0166791_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0166791_17	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0166791_17	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0166791_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0166791_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0166791_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0166791_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0166791_18	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0166791_18	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0166791_18	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0166791_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0166791_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0166791_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0166791_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166791_19	UniRef90	UniRef90_UPI00156F1D4A	HNH endonuclease	NA
UHGV-0166791_19	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0166791_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0166791_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0166791_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0166791_20	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-0166791_20	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0166791_20	Pfam	PF07374	NA	DUF1492
UHGV-0166791_20	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0166791_21	PHROG	phrog_6568	NA	unknown function
UHGV-0166791_21	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0166791_22	PHROG	phrog_15198	NA	unknown function
UHGV-0166791_22	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0166791_23	PHROG	phrog_8684	NA	unknown function
UHGV-0166791_23	UniRef90	UniRef90_UPI00156FED61	YopX family protein	NA
UHGV-0166791_23	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0166791_23	Pfam	PF09643	YopX protein	YopX
UHGV-0166791_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0166791_25	PHROG	phrog_20593	NA	unknown function
UHGV-0166791_25	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0166791_26	PHROG	phrog_10714	NA	unknown function
UHGV-0166791_27	PHROG	phrog_15198	NA	unknown function
UHGV-0166791_27	UniRef90	UniRef90_UPI0015708581	NA	NA
UHGV-0166791_27	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0166791_27	Pfam	PF04448	NA	DUF551
UHGV-0166791_28	PHROG	phrog_15198	NA	unknown function
UHGV-0166791_28	UniRef90	UniRef90_UPI00156F8460	NA	NA
UHGV-0166791_28	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0166791_28	Pfam	PF04448	NA	DUF551
UHGV-0166791_32	Structural annotation	PF17516, NF037951	NA	NA
UHGV-0166791_33	UniRef90	UniRef90_UPI001BC85D37	NA	NA
UHGV-0166791_33	eggNOG-mapper	476272.RUMHYD_03857	NA	NA
UHGV-0166791_33	Pfam	PF14199	NA	DUF4317
UHGV-0166791_33	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0166791_34	PHROG	phrog_7566	NA	unknown function
UHGV-0166791_34	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0166791_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0166791_36	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0166791_36	UniRef90	UniRef90_A0A174HNH0	Probable chromosome-partitioning protein parB	NA
UHGV-0166791_36	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0166791_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0166791_36	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0166791_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0166791_36	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0166791_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0166791_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0166791_37	UniRef90	UniRef90_A0A174HML3	Ribonuclease H	NA
UHGV-0166791_37	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0166791_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0166791_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0166791_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0166791_38	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-0166791_38	Structural annotation	PF01446	NA	NA
UHGV-0166791_39	PHROG	phrog_3777	NA	unknown function
UHGV-0166791_39	UniRef90	UniRef90_A0A3E4GMR6	NA	NA
UHGV-0166791_39	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0166791_39	Pfam	PF12957	NA	DUF3846
UHGV-0166791_39	Structural annotation	PF12957	NA	NA
UHGV-0166791_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0166791_43	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0166791_43	UniRef90	UniRef90_UPI00156DA2D3	phage antirepressor KilAC domain-containing protein	NA
UHGV-0166791_43	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0166791_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0166791_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0166791_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0166791_43	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0166791_44	PHROG	phrog_750	NA	unknown function
UHGV-0166791_44	eggNOG-mapper	1231377.C426_1696	NA	NA
UHGV-0166791_44	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0166791_45	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0166791_45	UniRef90	UniRef90_UPI00148AE9DD	aspartate ammonia-lyase	NA
UHGV-0166791_45	eggNOG-mapper	416870.llmg_2132	NA	NA
UHGV-0166791_45	Structural annotation	PF11195	NA	NA
UHGV-0166791_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0166791_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0166791_50	UniRef90	UniRef90_UPI0018978DE3	helix-turn-helix domain-containing protein	NA
UHGV-0166791_50	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0166791_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166791_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166791_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA