UHGV-0166945

Genome information

Genome length 27,149 bps

CDS count 53

Completeness 64.23% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166945
vOTU ID	vOTU-028317
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_518795
BioSample	SAMN06164429
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32
Jumbo phage	No

Genome content
Genome length	27,149 bps
GC content	54.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.15%
Average CDS length	451.13 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166945_3	PHROG	phrog_885	major tail protein	tail
UHGV-0166945_3	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0166945_3	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0166945_3	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0166945_3	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0166945_4	Structural annotation	PF13554	NA	NA
UHGV-0166945_5	PHROG	phrog_17977	NA	unknown function
UHGV-0166945_5	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0166945_5	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0166945_5	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0166945_7	PHROG	phrog_544	major head protein	head and packaging
UHGV-0166945_7	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0166945_7	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0166945_7	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0166945_8	Structural annotation	PF06810	NA	NA
UHGV-0166945_9	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0166945_9	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0166945_9	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0166945_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0166945_10	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0166945_10	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0166945_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0166945_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0166945_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0166945_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0166945_11	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0166945_11	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0166945_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0166945_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0166945_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0166945_11	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0166945_14	UniRef90	UniRef90_A0A415XKB0	XRE family transcriptional regulator	NA
UHGV-0166945_14	eggNOG-mapper	767817.Desgi_2502	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0166945_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0166945_14	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0166945_15	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0166945_15	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0166945_15	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0166945_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0166945_15	COG	COG2369	NA	NA
UHGV-0166945_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0166945_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0166945_17	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0166945_17	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0166945_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0166945_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0166945_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166945_18	PHROG	phrog_10250	NA	unknown function
UHGV-0166945_18	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0166945_18	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0166945_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0166945_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0166945_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166945_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0166945_19	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0166945_19	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0166945_19	Structural annotation	PF04218	NA	NA
UHGV-0166945_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0166945_20	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0166945_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0166945_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0166945_22	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0166945_22	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0166945_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0166945_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0166945_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0166945_23	PHROG	phrog_3136	NA	unknown function
UHGV-0166945_23	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0166945_23	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0166945_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0166945_23	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0166945_25	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0166945_25	UniRef90	UniRef90_UPI001CBD79D0	DNA cytosine methyltransferase	NA
UHGV-0166945_25	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0166945_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0166945_25	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0166945_27	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0166945_28	Structural annotation	PF11417	NA	NA
UHGV-0166945_29	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0166945_29	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0166945_29	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0166945_29	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0166945_29	Pfam	PF19808	NA	DUF6291
UHGV-0166945_29	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0166945_29	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0166945_29	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0166945_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0166945_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0166945_30	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0166945_30	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0166945_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0166945_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0166945_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0166945_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0166945_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0166945_31	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166945_31	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0166945_31	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0166945_31	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0166945_33	Structural annotation	PF06718	NA	NA
UHGV-0166945_37	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0166945_38	PHROG	phrog_4433	NA	unknown function
UHGV-0166945_38	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0166945_38	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0166945_38	Structural annotation	NF007410	NA	NA
UHGV-0166945_41	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0166945_41	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0166945_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0166945_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0166945_42	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0166945_42	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0166945_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0166945_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0166945_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0166945_42	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0166945_45	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0166945_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0166945_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0166945_46	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0166945_46	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0166945_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166945_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166945_46	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0166945_47	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0166945_49	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0166945_49	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0166945_49	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0166945_49	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0166945_49	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0166945_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0166945_49	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0166945_52	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0166945_52	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0166945_52	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0166945_53	KOfam	K14059	int; integrase	NA
UHGV-0166945_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0166945_53	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0166945_53	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0166945_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0166945_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0166945_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA