UHGV-0167059

Genome information

Genome length 30,776 bps

CDS count 43

Completeness 82.38% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167059
vOTU ID	vOTU-022345
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_526404
BioSample	SAMN06164969
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.36
Jumbo phage	No

Genome content
Genome length	30,776 bps
GC content	42.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.49%
Average CDS length	671.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167059_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0167059_1	PHROG	phrog_435	endolysin	lysis
UHGV-0167059_1	UniRef90	UniRef90_A0A2N5NRG3	MurNAc-LAA domain-containing protein	NA
UHGV-0167059_1	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0167059_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0167059_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0167059_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0167059_2	PHROG	phrog_10091	holin	lysis
UHGV-0167059_2	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0167059_2	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0167059_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0167059_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0167059_2	COG	COG5546	NA	NA
UHGV-0167059_2	Structural annotation	COG5546	NA	NA
UHGV-0167059_3	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0167059_4	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0167059_4	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0167059_4	UniRef90	UniRef90_UPI0004634EC1	collagen-like protein	NA
UHGV-0167059_4	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0167059_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0167059_4	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0167059_4	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0167059_5	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0167059_5	UniRef90	UniRef90_UPI001186A0C2	phage tail family protein	NA
UHGV-0167059_5	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0167059_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0167059_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0167059_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0167059_5	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0167059_6	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0167059_6	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0167059_6	UniRef90	UniRef90_A0A3E4V829	Phage tail tape measure protein	NA
UHGV-0167059_6	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-0167059_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0167059_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0167059_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0167059_6	COG	COG3953	SLT domain protein	NA
UHGV-0167059_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0167059_7	PHROG	phrog_709	NA	unknown function
UHGV-0167059_7	UniRef90	UniRef90_A0A0D6DV15	Prophage pi2 protein 40	NA
UHGV-0167059_7	eggNOG-mapper	1232453.BAIF02000028_gene2730	NA	NA
UHGV-0167059_7	Structural annotation	PF19591	NA	NA
UHGV-0167059_8	PHROG	phrog_88	major tail protein	tail
UHGV-0167059_8	UniRef90	UniRef90_A0A3E4V8A6	Phage tail protein	NA
UHGV-0167059_8	eggNOG-mapper	1232453.BAIF02000028_gene2729	phage major tail protein, phi13 family	NA
UHGV-0167059_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0167059_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0167059_9	PHROG	phrog_78	tail terminator	connector
UHGV-0167059_9	UniRef90	UniRef90_A0A0D6DV47	Prophage pi2 protein 38	NA
UHGV-0167059_9	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0167059_9	Structural annotation	PF20765	NA	NA
UHGV-0167059_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0167059_10	UniRef90	UniRef90_UPI000465037A	HK97 gp10 family phage protein	NA
UHGV-0167059_10	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0167059_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0167059_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0167059_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0167059_11	UniRef90	UniRef90_UPI001D057432	phage head closure protein	NA
UHGV-0167059_11	eggNOG-mapper	1232453.BAIF02000028_gene2726	NA	NA
UHGV-0167059_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0167059_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167059_12	PHROG	phrog_2550	NA	unknown function
UHGV-0167059_12	UniRef90	UniRef90_A0A3E3JYI5	Phage gp6-like head-tail connector protein	NA
UHGV-0167059_12	eggNOG-mapper	1232453.BAIF02000028_gene2725	NA	NA
UHGV-0167059_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0167059_13	PHROG	phrog_366	tail fiber protein	tail
UHGV-0167059_13	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0167059_13	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0167059_13	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0167059_13	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0167059_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0167059_14	UniRef90	UniRef90_UPI000466EB68	phage major capsid protein	NA
UHGV-0167059_14	eggNOG-mapper	1232453.BAIF02000028_gene2723	capsid protein	NA
UHGV-0167059_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0167059_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0167059_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0167059_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0167059_15	KOfam	K06904	NA	NA
UHGV-0167059_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0167059_15	UniRef90	UniRef90_A0A3E4V855	HK97 family phage prohead protease	NA
UHGV-0167059_15	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0167059_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0167059_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0167059_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0167059_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0167059_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0167059_16	UniRef90	UniRef90_A0A3E4V862	Phage portal protein	NA
UHGV-0167059_16	eggNOG-mapper	1232453.BAIF02000028_gene2721	Phage portal protein, HK97 family	NA
UHGV-0167059_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0167059_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0167059_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0167059_16	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0167059_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0167059_18	UniRef90	UniRef90_A0A3E4V817	Terminase large subunit	NA
UHGV-0167059_18	eggNOG-mapper	1232453.BAIF02000028_gene2720	Phage Terminase	NA
UHGV-0167059_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0167059_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0167059_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0167059_18	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0167059_19	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0167059_19	UniRef90	UniRef90_UPI001D0DE0A6	P27 family phage terminase small subunit	NA
UHGV-0167059_19	eggNOG-mapper	1158604.I591_01771	Phage terminase, small subunit	NA
UHGV-0167059_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0167059_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0167059_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0167059_20	Structural annotation	PF04320, MF_00360, NF008333, COG3171	NA	NA
UHGV-0167059_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167059_21	UniRef90	UniRef90_A0A3E4V813	HNH endonuclease	NA
UHGV-0167059_21	eggNOG-mapper	1232453.BAIF02000028_gene2717	HNH nucleases	NA
UHGV-0167059_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0167059_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0167059_22	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0167059_22	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0167059_22	Structural annotation	PF02996	NA	NA
UHGV-0167059_24	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0167059_26	PHROG	phrog_15198	NA	unknown function
UHGV-0167059_26	UniRef90	UniRef90_UPI001D04EA1D	NA	NA
UHGV-0167059_26	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0167059_26	Pfam	PF04448	NA	DUF551
UHGV-0167059_26	Structural annotation	PF04448	NA	NA
UHGV-0167059_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0167059_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0167059_31	UniRef90	UniRef90_A0A6N3DEG0	PAPS_reduct domain-containing protein	NA
UHGV-0167059_31	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0167059_31	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0167059_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0167059_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0167059_31	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0167059_32	Structural annotation	NF041290	NA	NA
UHGV-0167059_33	PHROG	phrog_23374	NA	unknown function
UHGV-0167059_33	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0167059_35	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0167059_35	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-0167059_35	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0167059_35	Pfam	PF06048	NA	DUF927
UHGV-0167059_35	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0167059_35	COG	COG5519	NA	NA
UHGV-0167059_35	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0167059_36	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0167059_36	PHROG	phrog_11992	NA	unknown function
UHGV-0167059_36	UniRef90	UniRef90_UPI00156FEB22	CHC2 zinc finger domain-containing protein	NA
UHGV-0167059_36	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-0167059_36	PADLOC	drt-UG29	DRT	DRT
UHGV-0167059_36	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0167059_36	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0167059_36	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0167059_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0167059_37	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-0167059_37	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0167059_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0167059_37	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0167059_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0167059_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0167059_38	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-0167059_38	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0167059_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0167059_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0167059_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0167059_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0167059_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0167059_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0167059_39	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0167059_39	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0167059_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0167059_39	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0167059_41	PHROG	phrog_30234	NA	unknown function
UHGV-0167059_41	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0167059_43	PHROG	phrog_7964	NA	unknown function
UHGV-0167059_43	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0167059_43	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0167059_43	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0167059_43	Structural annotation	NF007499	NA	NA