UHGV-0167187

Genome information

Genome length 38,524 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167187
vOTU ID	vOTU-075081
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_546744
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.87
Jumbo phage	No

Genome content
Genome length	38,524 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.62%
Average CDS length	666.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167187_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0167187_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0167187_1	UniRef90	UniRef90_A0A173Z7C9	Resolvase, N terminal domain	NA
UHGV-0167187_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0167187_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0167187_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0167187_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0167187_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0167187_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0167187_2	PHROG	phrog_38135	NA	unknown function
UHGV-0167187_2	UniRef90	UniRef90_UPI001F3985DB	NA	NA
UHGV-0167187_2	eggNOG-mapper	1469948.JPNB01000001_gene2385	belongs to the thioredoxin family	NA
UHGV-0167187_2	Pfam	PF14020	NA	DUF4236
UHGV-0167187_2	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0167187_2	Structural annotation	PF14020	NA	NA
UHGV-0167187_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0167187_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167187_4	UniRef90	UniRef90_UPI00156F4263	helix-turn-helix domain-containing protein	NA
UHGV-0167187_4	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167187_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167187_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167187_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0167187_6	PHROG	phrog_21028	NA	unknown function
UHGV-0167187_6	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0167187_6	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0167187_9	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0167187_12	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0167187_12	UniRef90	UniRef90_UPI001D06DB67	ATP-binding protein	NA
UHGV-0167187_12	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0167187_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0167187_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0167187_13	PHROG	phrog_18107	NA	unknown function
UHGV-0167187_13	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0167187_13	Structural annotation	PF05037	NA	NA
UHGV-0167187_14	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0167187_14	UniRef90	UniRef90_A0A412QC14	ERCC4 domain-containing protein	NA
UHGV-0167187_14	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0167187_14	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0167187_14	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0167187_15	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0167187_15	PHROG	phrog_11992	NA	unknown function
UHGV-0167187_15	UniRef90	UniRef90_A0A412QBZ4	DNA primase	NA
UHGV-0167187_15	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0167187_15	PADLOC	drt-UG29	DRT	DRT
UHGV-0167187_15	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0167187_15	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0167187_15	Structural annotation	PF01807	NA	NA
UHGV-0167187_16	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0167187_16	UniRef90	UniRef90_UPI00156F6831	NA	NA
UHGV-0167187_16	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0167187_16	Pfam	PF06048	NA	DUF927
UHGV-0167187_16	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0167187_16	COG	COG5519	NA	NA
UHGV-0167187_16	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0167187_17	PHROG	phrog_23374	NA	unknown function
UHGV-0167187_18	PHROG	phrog_3253	NA	unknown function
UHGV-0167187_18	eggNOG-mapper	658655.HMPREF0988_02578	NA	NA
UHGV-0167187_19	Structural annotation	PF01917, NF006325	NA	NA
UHGV-0167187_20	eggNOG-mapper	1232453.BAIF02000057_gene1147	NA	NA
UHGV-0167187_21	UniRef90	UniRef90_UPI001B3C5B03	NA	NA
UHGV-0167187_21	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0167187_21	Pfam	PF04448	NA	DUF551
UHGV-0167187_24	PHROG	phrog_15198	NA	unknown function
UHGV-0167187_24	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0167187_24	Pfam	PF04448	NA	DUF551
UHGV-0167187_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0167187_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0167187_25	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0167187_25	Structural annotation	MF_00307	NA	NA
UHGV-0167187_26	eggNOG-mapper	1410628.JNKS01000023_gene1753	NA	NA
UHGV-0167187_26	Structural annotation	PF20505	NA	NA
UHGV-0167187_27	eggNOG-mapper	610130.Closa_1386	NA	NA
UHGV-0167187_28	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0167187_28	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0167187_28	eggNOG-mapper	1220589.CD32_01745	Phage terminase, small subunit	NA
UHGV-0167187_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0167187_28	COG	COG5484	NA	NA
UHGV-0167187_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0167187_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0167187_29	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0167187_29	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0167187_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0167187_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0167187_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0167187_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0167187_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0167187_30	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0167187_30	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0167187_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0167187_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0167187_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0167187_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0167187_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0167187_31	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0167187_31	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0167187_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0167187_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0167187_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0167187_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0167187_32	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0167187_32	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0167187_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0167187_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0167187_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0167187_32	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0167187_34	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0167187_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0167187_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167187_35	Structural annotation	PF05657	NA	NA
UHGV-0167187_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0167187_36	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0167187_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0167187_36	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0167187_37	PHROG	phrog_88	major tail protein	tail
UHGV-0167187_37	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0167187_37	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0167187_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0167187_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0167187_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0167187_40	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0167187_40	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0167187_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0167187_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0167187_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0167187_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0167187_41	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0167187_41	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0167187_41	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0167187_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0167187_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0167187_42	PHROG	phrog_13289	tail protein	tail
UHGV-0167187_42	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0167187_42	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0167187_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0167187_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0167187_42	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0167187_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0167187_43	PHROG	phrog_14030	NA	unknown function
UHGV-0167187_43	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0167187_43	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0167187_43	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0167187_43	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0167187_43	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0167187_43	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0167187_45	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-0167187_45	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0167187_45	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0167187_46	Structural annotation	PF00041	NA	NA
UHGV-0167187_47	PHROG	phrog_16164	NA	unknown function
UHGV-0167187_47	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0167187_48	PHROG	phrog_2310	NA	unknown function
UHGV-0167187_50	PHROG	phrog_4105	NA	unknown function
UHGV-0167187_50	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0167187_51	PHROG	phrog_1129	holin	lysis
UHGV-0167187_51	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0167187_51	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0167187_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0167187_51	Structural annotation	PF16079	NA	NA
UHGV-0167187_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0167187_52	PHROG	phrog_291	endolysin	lysis
UHGV-0167187_52	UniRef90	UniRef90_UPI00156E082A	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0167187_52	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0167187_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0167187_52	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0167187_52	Pfam	PF01476	LysM domain	LysM
UHGV-0167187_52	COG	COG1388	LysM repeat	NA
UHGV-0167187_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA