UHGV-0167305

Genome information

Genome length 38,390 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167305
vOTU ID	vOTU-046374
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_551558
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.48
Jumbo phage	No

Genome content
Genome length	38,390 bps
GC content	40.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.40%
Average CDS length	527.60 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167305_2	PHROG	phrog_156	portal protein	head and packaging
UHGV-0167305_2	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0167305_2	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0167305_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0167305_3	PHROG	phrog_31467	NA	unknown function
UHGV-0167305_3	UniRef90	UniRef90_UPI000EFB1325	terminase family protein	NA
UHGV-0167305_3	eggNOG-mapper	1121441.AUCX01000014_gene514	Terminase-like family	NA
UHGV-0167305_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0167305_3	COG	COG5565	Phage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0167305_3	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0167305_4	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0167305_4	UniRef90	UniRef90_A0A8F8QRC5	Transposase	NA
UHGV-0167305_4	eggNOG-mapper	1487921.DP68_08850	transposase activity	NA
UHGV-0167305_4	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0167305_6	eggNOG-mapper	546271.Selsp_2097	NA	NA
UHGV-0167305_7	PHROG	phrog_1281	NA	unknown function
UHGV-0167305_7	UniRef90	UniRef90_A0A2A2IPP2	XRE family transcriptional regulator	NA
UHGV-0167305_7	eggNOG-mapper	546271.Selsp_2096	NA	NA
UHGV-0167305_7	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0167305_7	COG	COG3600	NA	NA
UHGV-0167305_7	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0167305_8	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0167305_8	UniRef90	UniRef90_A0A7G6E7X2	Phage repressor protein	NA
UHGV-0167305_8	eggNOG-mapper	1449126.JQKL01000006_gene832	BRO family, N-terminal domain	NA
UHGV-0167305_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0167305_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0167305_8	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0167305_10	UniRef90	UniRef90_R9JJZ1	RHH_1 domain-containing protein	NA
UHGV-0167305_10	eggNOG-mapper	397287.C807_01320	NA	NA
UHGV-0167305_10	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0167305_11	PHROG	phrog_881	holin	lysis
UHGV-0167305_11	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0167305_11	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0167305_11	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0167305_11	Structural annotation	PF16938	NA	NA
UHGV-0167305_12	PHROG	phrog_5182	endolysin	lysis
UHGV-0167305_12	UniRef90	UniRef90_Q3Z7L4	Endolysin, putative	NA
UHGV-0167305_12	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0167305_12	Pfam	PF05257	CHAP domain	CHAP
UHGV-0167305_12	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0167305_12	COG	COG1388	LysM repeat	NA
UHGV-0167305_12	Structural annotation	PF01476, PF10030, MF_02014, TIGR02594, NF004974, COG1388, COG4322	NA	NA
UHGV-0167305_13	PHROG	phrog_1863	NA	unknown function
UHGV-0167305_13	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0167305_16	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0167305_17	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0167305_18	PHROG	phrog_1194	NA	unknown function
UHGV-0167305_18	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0167305_18	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0167305_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0167305_19	UniRef90	UniRef90_A0A174WQT6	Phage-like protein	NA
UHGV-0167305_19	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0167305_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0167305_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0167305_20	PHROG	phrog_706	NA	unknown function
UHGV-0167305_20	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0167305_20	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0167305_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0167305_20	Structural annotation	PF06854	NA	NA
UHGV-0167305_21	PHROG	phrog_11299	NA	unknown function
UHGV-0167305_21	Structural annotation	PF10666	NA	NA
UHGV-0167305_22	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0167305_22	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0167305_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0167305_23	Structural annotation	PF11114	NA	NA
UHGV-0167305_24	Structural annotation	PF16724	NA	NA
UHGV-0167305_25	PHROG	phrog_3366	NA	unknown function
UHGV-0167305_25	Structural annotation	PF20536	NA	NA
UHGV-0167305_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0167305_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0167305_28	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0167305_28	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0167305_28	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0167305_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0167305_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0167305_31	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0167305_31	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0167305_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0167305_31	COG	COG2369	NA	NA
UHGV-0167305_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0167305_32	UniRef90	UniRef90_UPI00082C1C00	NA	NA
UHGV-0167305_32	eggNOG-mapper	556263.FSEG_01048	NA	NA
UHGV-0167305_32	Pfam	PF14359	NA	DUF4406
UHGV-0167305_32	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0167305_33	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167305_33	UniRef90	UniRef90_A0A7X9EDH9	Metallophos domain-containing protein	NA
UHGV-0167305_33	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0167305_33	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0167305_33	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0167305_33	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0167305_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0167305_34	UniRef90	UniRef90_A0A0X8VBF2	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0167305_34	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0167305_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0167305_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0167305_35	PHROG	phrog_29775	NA	unknown function
UHGV-0167305_35	UniRef90	UniRef90_A0A845R6F6	PBSX family phage terminase large subunit	NA
UHGV-0167305_35	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0167305_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0167305_35	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0167305_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0167305_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0167305_36	UniRef90	UniRef90_UPI001C86E879	terminase small subunit	NA
UHGV-0167305_36	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0167305_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0167305_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0167305_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0167305_37	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0167305_37	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0167305_37	UniRef90	UniRef90_R6GVF3	HicB-like domain-containing protein	NA
UHGV-0167305_37	eggNOG-mapper	888727.HMPREF9092_1410	NA	NA
UHGV-0167305_37	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0167305_37	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0167305_37	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0167305_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0167305_38	UniRef90	UniRef90_A0A2V2GJ29	Sigma70_r4 domain-containing protein	NA
UHGV-0167305_38	eggNOG-mapper	552396.HMPREF0863_01424	sigma factor activity	NA
UHGV-0167305_38	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0167305_38	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0167305_38	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0167305_38	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0167305_40	PHROG	phrog_31107	NA	unknown function
UHGV-0167305_44	PHROG	phrog_3136	NA	unknown function
UHGV-0167305_44	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0167305_44	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0167305_44	Pfam	PF04266	ASCH domain	ASCH
UHGV-0167305_44	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0167305_44	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0167305_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0167305_46	UniRef90	UniRef90_V2YAJ0	PAPS_reduct domain-containing protein	NA
UHGV-0167305_46	eggNOG-mapper	1378168.N510_03347	NA	NA
UHGV-0167305_46	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0167305_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0167305_46	Structural annotation	PF01507, MF_00063, TIGR00268, COG0175	NA	NA
UHGV-0167305_47	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0167305_47	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0167305_47	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0167305_47	Pfam	PF06356	NA	DUF1064
UHGV-0167305_47	Structural annotation	PF06356	NA	NA
UHGV-0167305_48	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0167305_48	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167305_48	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-0167305_48	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0167305_48	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0167305_48	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0167305_48	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0167305_49	PHROG	phrog_16304	NA	unknown function
UHGV-0167305_49	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0167305_49	eggNOG-mapper	1168289.AJKI01000067_gene1520	NA	NA
UHGV-0167305_49	Pfam	PF19808	NA	DUF6291
UHGV-0167305_49	Structural annotation	PF19808	NA	NA
UHGV-0167305_50	PHROG	phrog_2113	NA	unknown function
UHGV-0167305_50	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0167305_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0167305_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0167305_51	UniRef90	UniRef90_UPI000EFB1541	single-stranded DNA-binding protein	NA
UHGV-0167305_51	eggNOG-mapper	536233.CLO_1809	Single-stranded DNA-binding protein	NA
UHGV-0167305_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0167305_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0167305_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0167305_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0167305_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0167305_52	PHROG	phrog_7566	NA	unknown function
UHGV-0167305_52	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0167305_52	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0167305_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0167305_53	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0167305_53	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0167305_53	Structural annotation	PF05772	NA	NA
UHGV-0167305_54	PHROG	phrog_11717	NA	unknown function
UHGV-0167305_54	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0167305_54	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0167305_58	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0167305_58	UniRef90	UniRef90_UPI00067F0F09	NA	NA
UHGV-0167305_58	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0167305_58	Structural annotation	PF06573	NA	NA
UHGV-0167305_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0167305_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167305_60	UniRef90	UniRef90_A0A372WXU8	XRE family transcriptional regulator	NA
UHGV-0167305_60	eggNOG-mapper	1029718.SFBM_0097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167305_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167305_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0167305_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0167305_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0167305_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167305_61	UniRef90	UniRef90_A0A316QGI6	XRE family transcriptional regulator	NA
UHGV-0167305_61	eggNOG-mapper	1123511.KB905866_gene3782	sequence-specific DNA binding	NA
UHGV-0167305_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167305_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0167305_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0167305_62	PHROG	phrog_585	NA	unknown function
UHGV-0167305_62	UniRef90	UniRef90_A0A7X8ZBT0	NA	NA
UHGV-0167305_62	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0167305_62	Pfam	PF10711	NA	DUF2513
UHGV-0167305_62	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0167305_64	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0167305_64	UniRef90	UniRef90_G9RRN5	HTH cro/C1-type domain-containing protein	NA
UHGV-0167305_64	eggNOG-mapper	665956.HMPREF1032_03112	sequence-specific DNA binding	NA
UHGV-0167305_64	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0167305_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0167305_64	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0167305_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0167305_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167305_65	UniRef90	UniRef90_UPI0019685ED4	helix-turn-helix domain-containing protein	NA
UHGV-0167305_65	eggNOG-mapper	1121289.JHVL01000032_gene2479	sequence-specific DNA binding	NA
UHGV-0167305_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167305_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167305_65	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0167305_66	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0167305_66	PHROG	phrog_2737	NA	unknown function
UHGV-0167305_66	UniRef90	UniRef90_A0A316QDK0	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-0167305_66	eggNOG-mapper	575593.HMPREF0491_00119	RelB antitoxin	NA
UHGV-0167305_66	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0167305_66	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0167305_66	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA