UHGV-0167461

Genome information

Genome length 40,105 bps

CDS count 71

Completeness 95.08% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167461
vOTU ID	vOTU-063786
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_542661
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.61
Jumbo phage	No

Genome content
Genome length	40,105 bps
GC content	54.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.21%
Average CDS length	508.73 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167461_2	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0167461_2	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0167461_2	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0167461_4	PHROG	phrog_3558	tail protein	tail
UHGV-0167461_4	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0167461_4	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0167461_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0167461_4	COG	COG4926	Phage-related protein	NA
UHGV-0167461_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0167461_5	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0167461_5	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0167461_5	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0167461_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0167461_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0167461_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0167461_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0167461_8	PHROG	phrog_885	major tail protein	tail
UHGV-0167461_8	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0167461_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0167461_9	Structural annotation	PF13554	NA	NA
UHGV-0167461_10	PHROG	phrog_17977	NA	unknown function
UHGV-0167461_10	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0167461_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167461_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0167461_12	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0167461_12	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0167461_12	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0167461_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0167461_15	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0167461_15	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0167461_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0167461_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0167461_17	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0167461_17	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0167461_17	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0167461_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0167461_17	COG	COG2369	NA	NA
UHGV-0167461_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0167461_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0167461_18	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0167461_18	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0167461_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0167461_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0167461_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0167461_19	PHROG	phrog_10250	NA	unknown function
UHGV-0167461_19	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0167461_19	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0167461_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0167461_19	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0167461_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0167461_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0167461_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0167461_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0167461_20	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0167461_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0167461_21	PHROG	phrog_27044	NA	unknown function
UHGV-0167461_21	UniRef90	UniRef90_A0A3F3JUD8	Citrulline cluster-linked protein	NA
UHGV-0167461_21	eggNOG-mapper	428126.CLOSPI_01525	NA	NA
UHGV-0167461_21	Pfam	PF06177	QueT transporter	QueT
UHGV-0167461_21	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0167461_21	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0167461_22	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0167461_22	UniRef90	UniRef90_A0A6N7S662	ParB domain-containing protein	NA
UHGV-0167461_22	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0167461_22	Structural annotation	PF00331, MF_00168, NF040790, COG0069	NA	NA
UHGV-0167461_23	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0167461_23	UniRef90	UniRef90_A0A3F3JUE2	ParB domain-containing protein	NA
UHGV-0167461_23	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0167461_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0167461_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0167461_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0167461_24	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0167461_25	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0167461_26	KOfam	K03700	recU; recombination protein U	NA
UHGV-0167461_26	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0167461_26	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0167461_26	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0167461_26	Pfam	PF03838	Recombination protein U	RecU
UHGV-0167461_26	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0167461_27	PHROG	phrog_3253	NA	unknown function
UHGV-0167461_27	UniRef90	UniRef90_UPI001C032A7B	resolvase	NA
UHGV-0167461_27	Structural annotation	PF18618	NA	NA
UHGV-0167461_28	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0167461_28	UniRef90	UniRef90_A0A1Y4MJF4	NA	NA
UHGV-0167461_28	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0167461_28	Structural annotation	PF18895, MF_01019, NF002747	NA	NA
UHGV-0167461_29	PHROG	phrog_6568	NA	unknown function
UHGV-0167461_29	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0167461_32	Structural annotation	MF_00273, COG2157	NA	NA
UHGV-0167461_34	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0167461_35	Structural annotation	PF11417	NA	NA
UHGV-0167461_36	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0167461_36	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167461_36	UniRef90	UniRef90_A0A3E2UDK7	DnaD domain protein	NA
UHGV-0167461_36	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0167461_36	Pfam	PF19808	NA	DUF6291
UHGV-0167461_36	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0167461_36	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0167461_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0167461_36	Structural annotation	PF19808	NA	NA
UHGV-0167461_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0167461_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0167461_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0167461_37	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0167461_38	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0167461_38	UniRef90	UniRef90_A0A3E2UDI4	Phage recombination protein Bet	NA
UHGV-0167461_38	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0167461_38	Pfam	PF03837	RecT family	RecT
UHGV-0167461_38	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0167461_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0167461_38	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0167461_39	PHROG	phrog_674	NA	unknown function
UHGV-0167461_39	UniRef90	UniRef90_A0A3E2UDL3	NA	NA
UHGV-0167461_39	eggNOG-mapper	742722.HMPREF9463_00201	NA	NA
UHGV-0167461_39	Pfam	PF07083	NA	DUF1351
UHGV-0167461_39	Structural annotation	PF07083	NA	NA
UHGV-0167461_40	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0167461_41	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0167461_41	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0167461_41	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0167461_41	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0167461_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0167461_44	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0167461_44	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0167461_44	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0167461_44	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0167461_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0167461_44	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0167461_44	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0167461_45	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0167461_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0167461_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167461_46	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0167461_46	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0167461_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167461_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167461_46	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0167461_47	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0167461_49	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0167461_49	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0167461_50	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0167461_50	UniRef90	UniRef90_A0A3A9G8M1	Zinc-ribbon domain-containing protein	NA
UHGV-0167461_50	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0167461_50	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0167461_50	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0167461_50	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0167461_53	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0167461_54	KOfam	K14059	int; integrase	NA
UHGV-0167461_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0167461_54	UniRef90	UniRef90_A0A6N7TNW8	Tyrosine-type recombinase/integrase	NA
UHGV-0167461_54	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0167461_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0167461_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0167461_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0167461_54	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0167461_56	Structural annotation	PF12510	NA	NA
UHGV-0167461_57	PHROG	phrog_20016	NA	unknown function
UHGV-0167461_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0167461_57	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0167461_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0167461_59	PHROG	phrog_16490	NA	unknown function
UHGV-0167461_59	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0167461_60	PHROG	phrog_22984	NA	unknown function
UHGV-0167461_61	PHROG	phrog_21718	NA	unknown function
UHGV-0167461_61	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0167461_62	PHROG	phrog_3754	NA	unknown function
UHGV-0167461_62	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0167461_64	eggNOG-mapper	1384065.JAGS01000001_gene3265	sequence-specific DNA binding	NA
UHGV-0167461_64	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0167461_64	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0167461_66	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167461_66	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0167461_66	Structural annotation	PF00847	NA	NA
UHGV-0167461_67	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0167461_69	PHROG	phrog_15303	NA	unknown function
UHGV-0167461_69	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0167461_71	KOfam	K07273	acm; lysozyme	NA
UHGV-0167461_71	PHROG	phrog_291	endolysin	lysis
UHGV-0167461_71	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0167461_71	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0167461_71	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0167461_71	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0167461_71	Structural annotation	PF01183, COG3757	NA	NA