UHGV-0167491

Genome information

Genome length 33,348 bps

CDS count 48

Completeness 88.57% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167491
vOTU ID	vOTU-028343
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541465
BioSample	SAMN06328433
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.46
Jumbo phage	No

Genome content
Genome length	33,348 bps
GC content	44.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.75%
Average CDS length	648.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167491_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0167491_1	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0167491_1	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-0167491_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0167491_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0167491_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0167491_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0167491_2	PHROG	phrog_670	endolysin	lysis
UHGV-0167491_2	UniRef90	UniRef90_UPI001D075C5B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0167491_2	eggNOG-mapper	658655.HMPREF0988_02541	Ami_2	NA
UHGV-0167491_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0167491_2	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0167491_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0167491_2	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0167491_2	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-0167491_3	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0167491_5	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0167491_5	UniRef90	UniRef90_UPI000C083E19	Xaa-His dipeptidase	NA
UHGV-0167491_5	eggNOG-mapper	536233.CLO_1418	transposase activity	NA
UHGV-0167491_5	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0167491_5	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0167491_5	Structural annotation	PF07141	NA	NA
UHGV-0167491_6	UniRef90	UniRef90_UPI0013742210	hemagglutinin	NA
UHGV-0167491_7	PHROG	phrog_1129	holin	lysis
UHGV-0167491_7	UniRef90	UniRef90_UPI000485FFFD	phage holin family protein	NA
UHGV-0167491_7	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0167491_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0167491_7	Structural annotation	PF16079	NA	NA
UHGV-0167491_9	UniRef90	UniRef90_A0A6N4TPD2	HTH luxR-type domain-containing protein	NA
UHGV-0167491_9	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0167491_10	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0167491_10	UniRef90	UniRef90_A0A396KF73	ORF6N domain-containing protein	NA
UHGV-0167491_10	eggNOG-mapper	1235798.C817_03462	ORF6N domain	NA
UHGV-0167491_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0167491_10	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-0167491_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0167491_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167491_11	UniRef90	UniRef90_A0A7X4ZQ93	XRE family transcriptional regulator	NA
UHGV-0167491_11	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167491_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167491_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0167491_11	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0167491_12	UniRef90	UniRef90_A0A7X4ZST9	XRE family transcriptional regulator	NA
UHGV-0167491_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167491_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167491_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0167491_15	PHROG	phrog_10714	NA	unknown function
UHGV-0167491_15	UniRef90	UniRef90_R6PMU2	DNA polymerase II large subunit	NA
UHGV-0167491_15	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0167491_16	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0167491_16	UniRef90	UniRef90_UPI001594A542	NA	NA
UHGV-0167491_16	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0167491_17	PHROG	phrog_7566	NA	unknown function
UHGV-0167491_17	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0167491_18	PHROG	phrog_15077	NA	unknown function
UHGV-0167491_18	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0167491_18	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0167491_19	PHROG	phrog_8470	NA	unknown function
UHGV-0167491_19	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0167491_19	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0167491_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0167491_19	Structural annotation	PF14284	NA	NA
UHGV-0167491_20	PHROG	phrog_4433	NA	unknown function
UHGV-0167491_20	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0167491_20	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0167491_20	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0167491_21	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0167491_22	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0167491_22	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0167491_22	UniRef90	UniRef90_R9JUW5	RNase H type-1 domain-containing protein	NA
UHGV-0167491_22	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0167491_22	Pfam	PF00075	RNase H	RNase_H
UHGV-0167491_22	COG	COG0328	Ribonuclease HI	NA
UHGV-0167491_22	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0167491_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0167491_23	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0167491_23	Structural annotation	PF01446	NA	NA
UHGV-0167491_27	PHROG	phrog_9607	NA	unknown function
UHGV-0167491_27	UniRef90	UniRef90_Q92CD0	Lin1257 protein	NA
UHGV-0167491_27	eggNOG-mapper	272626.lin1257	NA	NA
UHGV-0167491_27	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0167491_30	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0167491_30	UniRef90	UniRef90_A0A174CAY1	Helix-turn-helix	NA
UHGV-0167491_30	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167491_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167491_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0167491_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0167491_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0167491_31	UniRef90	UniRef90_A0A174C5F9	LexA repressor	NA
UHGV-0167491_31	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0167491_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167491_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0167491_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0167491_31	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0167491_32	PHROG	phrog_5783	NA	unknown function
UHGV-0167491_32	UniRef90	UniRef90_R6EW51	NYN domain-containing protein	NA
UHGV-0167491_32	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-0167491_32	Pfam	PF01936	NYN domain	NYN
UHGV-0167491_32	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0167491_32	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0167491_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0167491_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0167491_33	UniRef90	UniRef90_A0A894KEI4	Recombinase	NA
UHGV-0167491_33	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0167491_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0167491_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0167491_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0167491_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0167491_33	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0167491_34	PHROG	phrog_1220	head protein	head and packaging
UHGV-0167491_34	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0167491_34	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0167491_35	PHROG	phrog_538	minor tail protein	tail
UHGV-0167491_35	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0167491_35	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0167491_35	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0167491_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0167491_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0167491_36	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-0167491_36	eggNOG-mapper	665956.HMPREF1032_00687	Phage tail protein	NA
UHGV-0167491_36	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0167491_36	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0167491_37	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0167491_37	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0167491_37	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0167491_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0167491_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0167491_39	PHROG	phrog_88	major tail protein	tail
UHGV-0167491_39	UniRef90	UniRef90_A0A6N9Q756	Phage tail protein	NA
UHGV-0167491_39	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-0167491_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0167491_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0167491_40	Structural annotation	PF05657	NA	NA
UHGV-0167491_41	Structural annotation	TIGR01725	NA	NA
UHGV-0167491_42	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0167491_42	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0167491_42	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0167491_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167491_43	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-0167491_43	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0167491_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0167491_44	UniRef90	UniRef90_A0A841T7F8	Phage major capsid protein	NA
UHGV-0167491_44	eggNOG-mapper	315730.BcerKBAB4_3428	Phage capsid family	NA
UHGV-0167491_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0167491_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0167491_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0167491_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0167491_45	KOfam	K06904	NA	NA
UHGV-0167491_45	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0167491_45	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-0167491_45	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0167491_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0167491_45	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0167491_45	COG	COG3740	Phage head maturation protease	NA
UHGV-0167491_45	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0167491_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0167491_46	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-0167491_46	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0167491_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0167491_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0167491_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0167491_47	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0167491_47	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0167491_47	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0167491_47	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0167491_47	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0167491_47	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0167491_47	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0167491_48	PHROG	phrog_1066	NA	unknown function