UHGV-0167616

Genome information

Genome length 36,179 bps

CDS count 53

Completeness 98.94% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167616
vOTU ID	vOTU-077762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_542230
BioSample	SAMN06328464
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.88
Jumbo phage	No

Genome content
Genome length	36,179 bps
GC content	47.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.45%
Average CDS length	634.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167616_1	PHROG	phrog_38135	NA	unknown function
UHGV-0167616_1	UniRef90	UniRef90_A0A855A0M4	NA	NA
UHGV-0167616_1	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-0167616_1	Pfam	PF14020	NA	DUF4236
UHGV-0167616_1	Structural annotation	PF14020, PF05154	NA	NA
UHGV-0167616_2	PHROG	phrog_20936	NA	unknown function
UHGV-0167616_2	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0167616_2	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0167616_2	Structural annotation	PF06114	NA	NA
UHGV-0167616_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0167616_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167616_3	UniRef90	UniRef90_UPI001C026098	helix-turn-helix transcriptional regulator	NA
UHGV-0167616_3	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0167616_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0167616_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167616_3	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0167616_3	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0167616_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0167616_4	UniRef90	UniRef90_UPI001C031D8B	helix-turn-helix transcriptional regulator	NA
UHGV-0167616_4	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167616_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167616_4	Structural annotation	PF13560, NF041951, COG1476	NA	NA
UHGV-0167616_6	PHROG	phrog_4621	NA	unknown function
UHGV-0167616_6	eggNOG-mapper	1415774.U728_1126	NA	NA
UHGV-0167616_7	Structural annotation	PF11127	NA	NA
UHGV-0167616_11	PHROG	phrog_14970	NA	unknown function
UHGV-0167616_11	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0167616_11	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0167616_11	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0167616_11	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0167616_12	PHROG	phrog_398	NA	unknown function
UHGV-0167616_12	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0167616_12	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0167616_12	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0167616_12	Structural annotation	PF16784	NA	NA
UHGV-0167616_13	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0167616_13	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0167616_13	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0167616_13	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0167616_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0167616_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0167616_13	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0167616_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0167616_14	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0167616_14	UniRef90	UniRef90_A0A1Q6UYH5	Endodeoxyribonuclease RusA	NA
UHGV-0167616_14	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0167616_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0167616_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0167616_14	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0167616_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167616_15	UniRef90	UniRef90_A0A318EQP1	Putative phage protein (TIGR02220 family)	NA
UHGV-0167616_15	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0167616_15	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0167616_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0167616_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167616_16	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0167616_16	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0167616_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0167616_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0167616_16	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0167616_20	PHROG	phrog_8684	NA	unknown function
UHGV-0167616_20	UniRef90	UniRef90_A0A413YTI5	YopX domain-containing protein	NA
UHGV-0167616_20	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0167616_20	Pfam	PF09643	YopX protein	YopX
UHGV-0167616_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0167616_21	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0167616_21	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0167616_22	PHROG	phrog_20593	NA	unknown function
UHGV-0167616_23	PHROG	phrog_874	NA	unknown function
UHGV-0167616_23	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0167616_23	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0167616_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0167616_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0167616_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0167616_26	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0167616_26	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0167616_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0167616_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0167616_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0167616_26	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0167616_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0167616_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0167616_27	UniRef90	UniRef90_UPI001C035897	DNA cytosine methyltransferase	NA
UHGV-0167616_27	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0167616_27	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0167616_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0167616_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0167616_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0167616_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0167616_30	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0167616_30	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0167616_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0167616_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0167616_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0167616_30	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0167616_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0167616_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0167616_31	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0167616_31	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0167616_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0167616_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0167616_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0167616_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0167616_32	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0167616_32	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0167616_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0167616_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0167616_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0167616_33	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0167616_33	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0167616_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0167616_33	Pfam	PF21814	NA	DUF6883
UHGV-0167616_33	COG	COG2369	NA	NA
UHGV-0167616_33	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0167616_34	UniRef90	UniRef90_F5RJP5	Chaperonin	NA
UHGV-0167616_34	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0167616_34	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0167616_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0167616_35	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0167616_35	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0167616_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0167616_35	Structural annotation	PF06810	NA	NA
UHGV-0167616_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0167616_36	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0167616_36	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0167616_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0167616_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0167616_39	PHROG	phrog_3366	NA	unknown function
UHGV-0167616_39	Pfam	PF20536	NA	DUF6751
UHGV-0167616_39	Structural annotation	PF20536	NA	NA
UHGV-0167616_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0167616_40	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0167616_40	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0167616_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0167616_40	Structural annotation	PF11114	NA	NA
UHGV-0167616_41	PHROG	phrog_3266	tail completion	connector
UHGV-0167616_41	Structural annotation	PF12691	NA	NA
UHGV-0167616_42	PHROG	phrog_3099	NA	unknown function
UHGV-0167616_42	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0167616_43	Structural annotation	PF16462	NA	NA
UHGV-0167616_44	PHROG	phrog_706	NA	unknown function
UHGV-0167616_44	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0167616_44	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0167616_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0167616_44	Structural annotation	PF06854	NA	NA
UHGV-0167616_45	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0167616_45	UniRef90	UniRef90_A0A348Z0U7	Phage tail tape measure protein	NA
UHGV-0167616_45	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0167616_45	COG	COG5412	Phage-related protein	NA
UHGV-0167616_45	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0167616_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0167616_46	UniRef90	UniRef90_A0A174GX45	Phage-related protein	NA
UHGV-0167616_46	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0167616_46	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0167616_47	PHROG	phrog_9886	NA	unknown function
UHGV-0167616_47	UniRef90	UniRef90_A0A358PQV6	Prophage_tail domain-containing protein	NA
UHGV-0167616_47	eggNOG-mapper	1235792.C808_03048	Prophage endopeptidase tail	NA
UHGV-0167616_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0167616_47	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0167616_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0167616_47	COG	COG4926	Phage-related protein	NA
UHGV-0167616_47	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0167616_48	PHROG	phrog_21765	NA	unknown function
UHGV-0167616_48	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0167616_48	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0167616_49	PHROG	phrog_1863	NA	unknown function
UHGV-0167616_49	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0167616_50	PHROG	phrog_443	holin	lysis
UHGV-0167616_50	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0167616_50	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0167616_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0167616_50	Structural annotation	PF16945	NA	NA
UHGV-0167616_51	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0167616_51	PHROG	phrog_7	endolysin	lysis
UHGV-0167616_51	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0167616_51	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0167616_51	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0167616_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0167616_51	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0167616_51	HAMAP	MF_04110	Endolysin	NA
UHGV-0167616_51	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0167616_52	KOfam	K23675	fmnP, ribU; riboflavin transporter	NA
UHGV-0167616_52	UniRef90	UniRef90_A0A173T4S1	Folate ECF transporter S component FolT	NA
UHGV-0167616_52	eggNOG-mapper	585394.RHOM_02960	ECF transporter, substrate-specific component	NA
UHGV-0167616_52	Pfam	PF12822	ECF transporter, substrate-specific component	ECF_trnsprt
UHGV-0167616_52	NCBIFam	TIGR04518.1	folate family ECF transporter S component	NA
UHGV-0167616_52	COG	COG4720	ECF-type riboflavin transporter, membrane (S) component	NA
UHGV-0167616_53	eggNOG-mapper	585394.RHOM_02965	NA	NA