UHGV-0167661

Genome information

Genome length 26,618 bps

CDS count 36

Completeness 68.58% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167661
vOTU ID	vOTU-028348
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541033
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.85
Jumbo phage	No

Genome content
Genome length	26,618 bps
GC content	41.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.57%
Average CDS length	674.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167661_1	PHROG	phrog_3399	NA	unknown function
UHGV-0167661_2	PHROG	phrog_1529	NA	unknown function
UHGV-0167661_2	UniRef90	UniRef90_A0A4V0E9T3	DNA-binding protein	NA
UHGV-0167661_2	eggNOG-mapper	999425.HMPREF9186_01940	NA	NA
UHGV-0167661_2	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-0167661_3	PHROG	phrog_6487	NA	unknown function
UHGV-0167661_3	UniRef90	UniRef90_A0A359YI00	NA	NA
UHGV-0167661_3	eggNOG-mapper	999425.HMPREF9186_02053	NA	NA
UHGV-0167661_3	Structural annotation	PF05587, NF040788, COG5456	NA	NA
UHGV-0167661_4	PHROG	phrog_1309	endolysin	lysis
UHGV-0167661_4	UniRef90	UniRef90_A0A1F1CBS4	Cell wall hydrolase	NA
UHGV-0167661_4	eggNOG-mapper	999425.HMPREF9186_02052	Bacterial SH3 domain	NA
UHGV-0167661_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0167661_4	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0167661_4	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0167661_4	Structural annotation	PF08460, PF05382, TIGR02219, COG0791	NA	NA
UHGV-0167661_5	PHROG	phrog_297	holin	lysis
UHGV-0167661_5	UniRef90	UniRef90_A0A4D6B4F0	Holin	NA
UHGV-0167661_5	eggNOG-mapper	999425.HMPREF9186_02051	COG5546 Small integral membrane protein	NA
UHGV-0167661_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0167661_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0167661_5	COG	COG5546	NA	NA
UHGV-0167661_5	Structural annotation	COG5546	NA	NA
UHGV-0167661_6	PHROG	phrog_4257	NA	unknown function
UHGV-0167661_6	UniRef90	UniRef90_A0A1L2JYP2	Transcription termination factor	NA
UHGV-0167661_6	eggNOG-mapper	1035189.HMPREF9954_0324	NA	NA
UHGV-0167661_7	PHROG	phrog_1554	NA	unknown function
UHGV-0167661_7	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-0167661_7	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0167661_7	Structural annotation	PF07104	NA	NA
UHGV-0167661_8	UniRef90	UniRef90_F5W039	Conserved domain protein	NA
UHGV-0167661_9	PHROG	phrog_2270	NA	unknown function
UHGV-0167661_9	UniRef90	UniRef90_UPI001BDA438C	gp58-like family protein	NA
UHGV-0167661_9	eggNOG-mapper	537874.B3GW15_9CAUD	peptidoglycan catabolic process	NA
UHGV-0167661_9	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0167661_9	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0167661_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0167661_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0167661_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0167661_10	UniRef90	UniRef90_UPI0018982A9B	phage tail family protein	NA
UHGV-0167661_10	eggNOG-mapper	537874.B3GW14_9CAUD	Phage tail protein	NA
UHGV-0167661_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0167661_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0167661_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0167661_11	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0167661_11	UniRef90	UniRef90_UPI001896B40F	phage tail tape measure protein	NA
UHGV-0167661_11	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-0167661_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0167661_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0167661_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0167661_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0167661_12	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0167661_12	UniRef90	UniRef90_W1TSL8	NA	NA
UHGV-0167661_12	Structural annotation	PF06896	NA	NA
UHGV-0167661_13	PHROG	phrog_88	major tail protein	tail
UHGV-0167661_13	UniRef90	UniRef90_UPI001BDB41CF	phage tail protein	NA
UHGV-0167661_13	eggNOG-mapper	764299.STRIC_0108	Phage tail tube protein	NA
UHGV-0167661_13	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0167661_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0167661_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0167661_14	PHROG	phrog_78	tail terminator	connector
UHGV-0167661_14	UniRef90	UniRef90_W1TYT9	NA	NA
UHGV-0167661_14	eggNOG-mapper	1123309.AQYB01000019_gene899	NA	NA
UHGV-0167661_14	Structural annotation	PF05657	NA	NA
UHGV-0167661_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0167661_15	UniRef90	UniRef90_UPI00066114D3	HK97 gp10 family phage protein	NA
UHGV-0167661_15	eggNOG-mapper	1154860.SAG0136_08110	NA	NA
UHGV-0167661_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0167661_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0167661_15	Structural annotation	TIGR01725	NA	NA
UHGV-0167661_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0167661_16	UniRef90	UniRef90_UPI001BD9C68B	head-tail adaptor protein	NA
UHGV-0167661_16	eggNOG-mapper	1154860.SAG0136_08105	Phage head-tail joining protein	NA
UHGV-0167661_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0167661_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167661_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0167661_17	UniRef90	UniRef90_UPI00189BB7BE	head-tail connector protein	NA
UHGV-0167661_17	eggNOG-mapper	1225805.J7KDJ3_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0167661_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0167661_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0167661_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0167661_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0167661_18	UniRef90	UniRef90_UPI001BDA9019	phage major capsid protein	NA
UHGV-0167661_18	eggNOG-mapper	764299.STRIC_0102	capsid protein	NA
UHGV-0167661_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0167661_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0167661_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0167661_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0167661_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0167661_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0167661_19	UniRef90	UniRef90_A0A428GXI4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0167661_19	eggNOG-mapper	1123309.AQYB01000019_gene894	Belongs to the peptidase S14 family	NA
UHGV-0167661_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0167661_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0167661_19	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0167661_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0167661_20	UniRef90	UniRef90_UPI00189920CB	phage portal protein	NA
UHGV-0167661_20	eggNOG-mapper	1403946.Q615_SPAC00127G0138	Phage portal protein	NA
UHGV-0167661_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0167661_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0167661_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0167661_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0167661_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0167661_22	UniRef90	UniRef90_UPI00189AC00E	terminase large subunit	NA
UHGV-0167661_22	eggNOG-mapper	1154860.SAG0136_08065	Terminase	NA
UHGV-0167661_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0167661_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0167661_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0167661_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0167661_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0167661_23	UniRef90	UniRef90_UPI0018998147	phage terminase small subunit P27 family	NA
UHGV-0167661_23	eggNOG-mapper	1403946.Q615_SPAC00127G0142	Phage terminase, small subunit	NA
UHGV-0167661_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0167661_23	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0167661_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0167661_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0167661_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167661_24	UniRef90	UniRef90_UPI00158AB17A	HNH endonuclease	NA
UHGV-0167661_24	eggNOG-mapper	1314.HKU360_01230	HNH nucleases	NA
UHGV-0167661_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0167661_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0167661_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0167661_25	UniRef90	UniRef90_UPI00158E126B	NA	NA
UHGV-0167661_25	eggNOG-mapper	936580.HMPREF1516_0728	sigma factor activity	NA
UHGV-0167661_25	Pfam	PF07374	NA	DUF1492
UHGV-0167661_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0167661_25	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0167661_30	PHROG	phrog_3606	NA	unknown function
UHGV-0167661_30	AcrCatalog	cluster_1646	NA	NA
UHGV-0167661_31	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0167661_31	UniRef90	UniRef90_A0A1F0A5T5	Methyltransferase	NA
UHGV-0167661_31	eggNOG-mapper	1054460.SPPN_00315	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0167661_31	PADLOC	oMTase_00019	orphan methyltransferase	RM
UHGV-0167661_31	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0167661_31	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0167661_31	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0167661_32	PHROG	phrog_121	NA	unknown function
UHGV-0167661_32	UniRef90	UniRef90_UPI0006603082	NA	NA
UHGV-0167661_32	eggNOG-mapper	1282664.H354_07590	NA	NA
UHGV-0167661_32	Pfam	PF07852	NA	DUF1642
UHGV-0167661_32	Structural annotation	PF07852, PF11061	NA	NA
UHGV-0167661_33	PHROG	phrog_35353	NA	unknown function
UHGV-0167661_34	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0167661_34	UniRef90	UniRef90_A0A6I3PU23	DNA-binding protein	NA
UHGV-0167661_34	eggNOG-mapper	999425.HMPREF9186_02016	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0167661_34	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0167661_34	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0167661_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0167661_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0167661_36	UniRef90	UniRef90_A0A6I3PW45	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0167661_36	eggNOG-mapper	35344.A0A097PAS0_BPT12	Endodeoxyribonuclease RusA	NA
UHGV-0167661_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0167661_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA