UHGV-0167762

Genome information

Genome length 34,424 bps

CDS count 42

Completeness 72.74% (medium-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167762
vOTU ID	vOTU-022357
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_500510
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.8
Jumbo phage	No

Genome content
Genome length	34,424 bps
GC content	43.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.87%
Average CDS length	771.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167762_1	PHROG	phrog_1640	tail protein	tail
UHGV-0167762_1	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0167762_1	Structural annotation	PF03906, NF011901	NA	NA
UHGV-0167762_3	PHROG	phrog_9880	NA	unknown function
UHGV-0167762_3	UniRef90	UniRef90_A0A412X674	MuF_C domain-containing protein	NA
UHGV-0167762_3	eggNOG-mapper	1123288.SOV_1c10760	NA	NA
UHGV-0167762_3	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0167762_4	UniRef90	UniRef90_A0A1B3X2T2	NlpC/P60 domain-containing protein	NA
UHGV-0167762_4	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0167762_5	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0167762_5	Structural annotation	TIGR02971	NA	NA
UHGV-0167762_6	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0167762_6	eggNOG-mapper	585503.HMPREF7545_1741	NA	NA
UHGV-0167762_6	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0167762_7	PHROG	phrog_376	tail protein	tail
UHGV-0167762_7	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0167762_7	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-0167762_8	PHROG	phrog_394	tail protein	tail
UHGV-0167762_8	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-0167762_8	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-0167762_8	Structural annotation	PF17212	NA	NA
UHGV-0167762_9	Structural annotation	PF12949	NA	NA
UHGV-0167762_10	PHROG	phrog_427	NA	unknown function
UHGV-0167762_10	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-0167762_10	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0167762_11	PHROG	phrog_212	major head protein	head and packaging
UHGV-0167762_11	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-0167762_11	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-0167762_11	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0167762_11	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0167762_12	PHROG	phrog_458	protease	other
UHGV-0167762_12	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-0167762_13	PHROG	phrog_528	NA	unknown function
UHGV-0167762_14	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0167762_14	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-0167762_14	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-0167762_14	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0167762_14	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0167762_16	PHROG	phrog_5902	NA	unknown function
UHGV-0167762_16	UniRef90	UniRef90_A0A1B1I1J7	Terminase	NA
UHGV-0167762_16	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0167762_16	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0167762_16	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0167762_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0167762_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0167762_17	UniRef90	UniRef90_A0A8B2QP55	Phage terminase small subunit	NA
UHGV-0167762_17	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0167762_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0167762_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0167762_17	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0167762_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0167762_19	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0167762_19	Structural annotation	PF21578	NA	NA
UHGV-0167762_23	PHROG	phrog_15609	NA	unknown function
UHGV-0167762_23	UniRef90	UniRef90_UPI001BEC46DC	NA	NA
UHGV-0167762_23	eggNOG-mapper	1395513.P343_08065	NA	NA
UHGV-0167762_23	Pfam	PF11300	NA	DUF3102
UHGV-0167762_23	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0167762_23	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0167762_24	PHROG	phrog_8470	NA	unknown function
UHGV-0167762_24	UniRef90	UniRef90_UPI0004F33ABF	PcfJ domain-containing protein	NA
UHGV-0167762_24	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0167762_24	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0167762_24	Structural annotation	PF14284	NA	NA
UHGV-0167762_25	UniRef90	UniRef90_UPI0012D927E7	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0167762_25	eggNOG-mapper	913865.DOT_1302	NA	NA
UHGV-0167762_25	Structural annotation	PF14058	NA	NA
UHGV-0167762_26	eggNOG-mapper	1232443.BAIA02000135_gene1446	NA	NA
UHGV-0167762_26	Structural annotation	PF19561	NA	NA
UHGV-0167762_32	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0167762_32	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0167762_33	PHROG	phrog_7566	NA	unknown function
UHGV-0167762_39	UniRef90	UniRef90_UPI0008D90F56	helix-turn-helix domain-containing protein	NA
UHGV-0167762_39	eggNOG-mapper	511437.Lbuc_1554	NA	NA
UHGV-0167762_39	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0167762_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0167762_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167762_40	UniRef90	UniRef90_UPI0007C7A800	helix-turn-helix domain-containing protein	NA
UHGV-0167762_40	eggNOG-mapper	1415775.U729_2578	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167762_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167762_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167762_40	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0167762_42	KOfam	K14059	int; integrase	NA
UHGV-0167762_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0167762_42	UniRef90	UniRef90_C9LU47	Integrase family protein	NA
UHGV-0167762_42	eggNOG-mapper	546271.Selsp_1366	Belongs to the 'phage' integrase family	NA
UHGV-0167762_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0167762_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0167762_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0167762_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA