UHGV-0167828

Genome information

Genome length 40,769 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167828
vOTU ID	vOTU-046380
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_550701
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.43
Jumbo phage	No

Genome content
Genome length	40,769 bps
GC content	29.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.17%
Average CDS length	624.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167828_1	PHROG	phrog_2329	NA	unknown function
UHGV-0167828_1	UniRef90	UniRef90_UPI00190FBB8D	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0167828_1	eggNOG-mapper	596329.HMPREF0631_1399	NA	NA
UHGV-0167828_1	Structural annotation	PF04014, NF008463	NA	NA
UHGV-0167828_2	PHROG	phrog_6775	NA	unknown function
UHGV-0167828_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0167828_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0167828_3	UniRef90	UniRef90_W1UDF0	Tyrosine recombinase XerC (Fragment)	NA
UHGV-0167828_3	eggNOG-mapper	632245.CLP_2681	Belongs to the 'phage' integrase family	NA
UHGV-0167828_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0167828_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0167828_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0167828_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0167828_7	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0167828_7	UniRef90	UniRef90_A0A2K4ZQ95	HTH cro/C1-type domain-containing protein	NA
UHGV-0167828_7	eggNOG-mapper	1304866.K413DRAFT_4715	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0167828_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0167828_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0167828_7	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0167828_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0167828_8	PHROG	phrog_95	integrase	integration and excision
UHGV-0167828_8	UniRef90	UniRef90_UPI0018AAC734	recombinase family protein	NA
UHGV-0167828_8	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0167828_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0167828_8	Pfam	PF07508	Recombinase	Recombinase
UHGV-0167828_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0167828_8	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0167828_9	PHROG	phrog_23726	NA	unknown function
UHGV-0167828_9	UniRef90	UniRef90_A0A0M1UTM9	Cell surface domain protein	NA
UHGV-0167828_9	eggNOG-mapper	1292035.H476_1245	domain, Protein	NA
UHGV-0167828_9	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0167828_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0167828_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167828_10	UniRef90	UniRef90_UPI001A9A9916	helix-turn-helix transcriptional regulator	NA
UHGV-0167828_10	eggNOG-mapper	1033737.CAEV01000076_gene557	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167828_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0167828_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167828_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167828_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0167828_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0167828_11	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0167828_11	UniRef90	UniRef90_UPI0011064915	helix-turn-helix domain-containing protein	NA
UHGV-0167828_11	eggNOG-mapper	1449126.JQKL01000003_gene1714	Helix-turn-helix XRE-family like proteins	NA
UHGV-0167828_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167828_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0167828_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0167828_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0167828_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0167828_12	UniRef90	UniRef90_A0A6B4D0M8	Phage antirepressor Ant	NA
UHGV-0167828_12	eggNOG-mapper	1522092.A0A090D834_9CAUD	DNA binding	NA
UHGV-0167828_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0167828_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0167828_12	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0167828_14	Structural annotation	PF12092	NA	NA
UHGV-0167828_16	Structural annotation	PF10922, NF007780	NA	NA
UHGV-0167828_18	Structural annotation	PF01765	NA	NA
UHGV-0167828_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0167828_20	UniRef90	UniRef90_UPI0018D1E8FC	ERF family protein	NA
UHGV-0167828_20	eggNOG-mapper	536232.CLM_1632	ERF superfamily	NA
UHGV-0167828_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0167828_20	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0167828_21	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0167828_21	UniRef90	UniRef90_UPI001F297A0E	DnaD domain protein	NA
UHGV-0167828_21	eggNOG-mapper	1292035.H476_1310	Replication initiation and membrane attachment	NA
UHGV-0167828_21	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0167828_21	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0167828_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0167828_21	Structural annotation	PF01978, TIGR01714, COG3935	NA	NA
UHGV-0167828_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0167828_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167828_22	UniRef90	UniRef90_UPI00110642E5	ATP-binding protein	NA
UHGV-0167828_22	eggNOG-mapper	1235802.C823_05699	PFAM IstB-like ATP binding protein	NA
UHGV-0167828_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0167828_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0167828_22	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0167828_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0167828_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0167828_23	UniRef90	UniRef90_UPI001F288E58	DNA cytosine methyltransferase	NA
UHGV-0167828_23	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0167828_23	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0167828_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0167828_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0167828_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0167828_23	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0167828_24	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167828_24	UniRef90	UniRef90_A0A1C5YZ22	HTH_Tnp_Tc3_1 domain-containing protein	NA
UHGV-0167828_24	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0167828_24	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0167828_24	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-0167828_25	Structural annotation	PF09889	NA	NA
UHGV-0167828_26	PHROG	phrog_824	NA	unknown function
UHGV-0167828_26	UniRef90	UniRef90_A0A1I3QHP0	VRR-NUC domain-containing protein	NA
UHGV-0167828_26	eggNOG-mapper	642492.Clole_0728	VRR-NUC domain	NA
UHGV-0167828_26	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0167828_26	Structural annotation	PF08774	NA	NA
UHGV-0167828_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0167828_27	UniRef90	UniRef90_A0A4R2KAL0	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0167828_27	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0167828_30	Structural annotation	PF18482	NA	NA
UHGV-0167828_33	PHROG	phrog_98	NA	unknown function
UHGV-0167828_33	UniRef90	UniRef90_A0A1C5YXI2	YopX protein	NA
UHGV-0167828_33	eggNOG-mapper	545697.HMPREF0216_02825	YopX protein	NA
UHGV-0167828_33	Pfam	PF09643	YopX protein	YopX
UHGV-0167828_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0167828_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0167828_35	PHROG	phrog_1558	NA	unknown function
UHGV-0167828_35	UniRef90	UniRef90_A0A174GQI9	Sigma-70 region 4 type 2	NA
UHGV-0167828_35	eggNOG-mapper	632245.CLP_2622	NA	NA
UHGV-0167828_35	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0167828_36	PHROG	phrog_9079	NA	unknown function
UHGV-0167828_36	eggNOG-mapper	1476973.JMMB01000007_gene1167	NA	NA
UHGV-0167828_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0167828_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167828_38	UniRef90	UniRef90_A0A6A8VJ97	HNH endonuclease	NA
UHGV-0167828_38	eggNOG-mapper	768486.EHR_09545	HNH nucleases	NA
UHGV-0167828_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0167828_39	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0167828_39	UniRef90	UniRef90_A0A1V4J037	Ribbon-helix-helix domain protein	NA
UHGV-0167828_39	eggNOG-mapper	86416.Clopa_1906	Ribbon-helix-helix domain	NA
UHGV-0167828_39	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0167828_39	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0167828_41	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0167828_41	UniRef90	UniRef90_UPI001E64C17F	P27 family phage terminase small subunit	NA
UHGV-0167828_41	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0167828_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0167828_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0167828_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0167828_42	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0167828_42	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0167828_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0167828_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0167828_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0167828_42	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0167828_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0167828_43	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0167828_43	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0167828_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0167828_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0167828_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0167828_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0167828_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0167828_44	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0167828_44	UniRef90	UniRef90_A0A1C5YER3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0167828_44	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0167828_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0167828_44	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0167828_44	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0167828_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0167828_45	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0167828_45	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0167828_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0167828_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0167828_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0167828_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0167828_46	PHROG	phrog_749	NA	unknown function
UHGV-0167828_46	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0167828_46	eggNOG-mapper	1211817.CCAT010000008_gene943	NA	NA
UHGV-0167828_47	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0167828_47	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0167828_47	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0167828_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167828_48	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0167828_49	PHROG	phrog_5509	neck protein	connector
UHGV-0167828_49	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-0167828_49	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0167828_50	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0167828_50	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0167828_50	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0167828_51	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0167828_52	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0167828_52	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0167828_52	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0167828_52	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0167828_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0167828_52	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0167828_52	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0167828_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0167828_53	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0167828_53	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0167828_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0167828_53	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0167828_54	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0167828_54	PHROG	phrog_7043	tail protein	tail
UHGV-0167828_54	UniRef90	UniRef90_UPI0011CA3AC4	SH3 domain-containing protein	NA
UHGV-0167828_54	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0167828_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0167828_54	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0167828_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0167828_54	COG	COG4926	Phage-related protein	NA
UHGV-0167828_54	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0167828_55	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0167828_55	eggNOG-mapper	483218.BACPEC_02431	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0167828_55	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0167828_55	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0167828_55	Structural annotation	PF16255, PF10651, NF041897, COG2755	NA	NA
UHGV-0167828_56	PHROG	phrog_1193	hemolysin	other
UHGV-0167828_56	UniRef90	UniRef90_UPI0018AB0AA6	hemolysin XhlA family protein	NA
UHGV-0167828_56	eggNOG-mapper	445335.CBN_3060	Haemolysin XhlA	NA
UHGV-0167828_56	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0167828_57	UniRef90	UniRef90_UPI000983D253	phage holin	NA
UHGV-0167828_57	eggNOG-mapper	272626.lin1702	Bacteriophage holin	NA
UHGV-0167828_57	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0167828_57	COG	COG5546	NA	NA
UHGV-0167828_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0167828_58	PHROG	phrog_3088	amidase	lysis
UHGV-0167828_58	UniRef90	UniRef90_A0A1C5YVD6	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0167828_58	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0167828_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0167828_58	Pfam	PF19087	NA	DUF5776
UHGV-0167828_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0167828_58	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA