UHGV-0167844

Genome information

Genome length 37,817 bps

CDS count 57

Completeness 65.15% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167844
vOTU ID	vOTU-022358
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541528
BioSample	SAMN06328462
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	65.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.93
Jumbo phage	No

Genome content
Genome length	37,817 bps
GC content	42.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.03%
Average CDS length	614.11 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167844_1	UniRef90	UniRef90_I3DMI2	ASCH domain protein	NA
UHGV-0167844_1	eggNOG-mapper	1231336.L248_2139	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0167844_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0167844_3	PHROG	phrog_3193	NA	unknown function
UHGV-0167844_3	UniRef90	UniRef90_F7UWI6	ASCH domain-containing protein	NA
UHGV-0167844_3	eggNOG-mapper	502558.EGYY_24900	ASCH	NA
UHGV-0167844_3	Pfam	PF04266	ASCH domain	ASCH
UHGV-0167844_3	Structural annotation	PF07370, MF_00684, NF003443, COG4293	NA	NA
UHGV-0167844_4	eggNOG-mapper	1461580.CCAS010000078_gene4207	NA	NA
UHGV-0167844_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167844_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0167844_7	PHROG	phrog_2412	NA	unknown function
UHGV-0167844_7	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0167844_7	eggNOG-mapper	665942.HMPREF1022_00138	NA	NA
UHGV-0167844_8	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0167844_8	UniRef90	UniRef90_R9QM30	Terminase large subunit	NA
UHGV-0167844_8	eggNOG-mapper	742722.HMPREF9463_00238	NA	NA
UHGV-0167844_8	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0167844_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0167844_9	UniRef90	UniRef90_A0A3N0AG66	Phage portal protein	NA
UHGV-0167844_9	eggNOG-mapper	742722.HMPREF9463_00239	Phage portal protein, SPP1 family	NA
UHGV-0167844_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0167844_9	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0167844_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0167844_10	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0167844_10	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0167844_11	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0167844_11	UniRef90	UniRef90_UPI0009F96B95	minor capsid protein	NA
UHGV-0167844_11	eggNOG-mapper	742722.HMPREF9463_00241	domain, Protein	NA
UHGV-0167844_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0167844_11	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0167844_11	COG	COG2369	NA	NA
UHGV-0167844_11	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0167844_12	KOfam	K03671	trxA; thioredoxin 1	NA
UHGV-0167844_12	UniRef90	UniRef90_A0A535D4L7	Thioredoxin family protein	NA
UHGV-0167844_12	eggNOG-mapper	357244.OTBS_0434	Thioredoxin	NA
UHGV-0167844_12	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0167844_12	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0167844_13	PHROG	phrog_882	NA	unknown function
UHGV-0167844_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0167844_14	UniRef90	UniRef90_A0A437UU03	NA	NA
UHGV-0167844_14	eggNOG-mapper	742722.HMPREF9463_00244	NA	NA
UHGV-0167844_14	Pfam	PF14265	NA	DUF4355
UHGV-0167844_14	Structural annotation	PF14265	NA	NA
UHGV-0167844_15	PHROG	phrog_909	major head protein	head and packaging
UHGV-0167844_15	Structural annotation	PF02924	NA	NA
UHGV-0167844_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-0167844_16	UniRef90	UniRef90_UPI000931CAC7	major capsid protein	NA
UHGV-0167844_16	eggNOG-mapper	742722.HMPREF9463_00246	Phage major capsid protein E	NA
UHGV-0167844_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0167844_16	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0167844_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0167844_17	UniRef90	UniRef90_UPI001CF82054	phage head-tail connector protein	NA
UHGV-0167844_17	eggNOG-mapper	742722.HMPREF9463_00247	NA	NA
UHGV-0167844_17	Structural annotation	PF05135	NA	NA
UHGV-0167844_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0167844_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0167844_19	UniRef90	UniRef90_UPI00189A8F38	HK97 gp10 family phage protein	NA
UHGV-0167844_19	eggNOG-mapper	742722.HMPREF9463_00249	NA	NA
UHGV-0167844_19	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0167844_20	UniRef90	UniRef90_A0A3N0AG57	NA	NA
UHGV-0167844_20	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0167844_20	Pfam	PF16807	NA	DUF5072
UHGV-0167844_20	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0167844_21	PHROG	phrog_1407	major tail protein	tail
UHGV-0167844_21	UniRef90	UniRef90_UPI00189A83F5	phage major tail protein, TP901-1 family	NA
UHGV-0167844_21	eggNOG-mapper	742722.HMPREF9463_00251	Phage tail tube protein	NA
UHGV-0167844_21	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0167844_21	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0167844_21	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0167844_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0167844_22	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-0167844_22	Structural annotation	PF11836	NA	NA
UHGV-0167844_23	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0167844_23	eggNOG-mapper	1437608.BBIA_1428	phage tail tape measure protein	NA
UHGV-0167844_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0167844_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0167844_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0167844_23	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0167844_25	PHROG	phrog_1887	tail protein	tail
UHGV-0167844_25	eggNOG-mapper	1688.BCUN_0259	NA	NA
UHGV-0167844_25	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0167844_26	PHROG	phrog_38707	NA	unknown function
UHGV-0167844_26	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-0167844_26	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-0167844_26	COG	COG4675	Phage tail collar domain	NA
UHGV-0167844_27	PHROG	phrog_1574	NA	unknown function
UHGV-0167844_27	UniRef90	UniRef90_A0A6M3L9A1	Putative glycosyltransferase	NA
UHGV-0167844_27	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0167844_27	Structural annotation	PF13712, MF_00624, TIGR01556, COG1216	NA	NA
UHGV-0167844_28	PHROG	phrog_30034	NA	unknown function
UHGV-0167844_28	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0167844_28	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0167844_28	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0167844_28	Structural annotation	PF14600	NA	NA
UHGV-0167844_29	PHROG	phrog_7389	tail fiber protein	tail
UHGV-0167844_32	KOfam	K14059	int; integrase	NA
UHGV-0167844_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0167844_32	UniRef90	UniRef90_A0A2K2U8R0	Site-specific integrase	NA
UHGV-0167844_32	eggNOG-mapper	1235794.C811_01388	Belongs to the 'phage' integrase family	NA
UHGV-0167844_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0167844_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0167844_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0167844_32	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0167844_34	PHROG	phrog_263	holin	lysis
UHGV-0167844_34	UniRef90	UniRef90_A0A3E3IC15	Phage holin	NA
UHGV-0167844_34	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-0167844_34	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0167844_34	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0167844_37	PHROG	phrog_21825	endolysin	lysis
UHGV-0167844_37	UniRef90	UniRef90_A0A1Y4QSN9	Peptidase C51 domain-containing protein	NA
UHGV-0167844_37	eggNOG-mapper	449447.MAE_16090	CHAP domain	NA
UHGV-0167844_37	Pfam	PF05257	CHAP domain	CHAP
UHGV-0167844_37	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0167844_37	Structural annotation	PF10030, TIGR02594, COG4991, COG3942	NA	NA
UHGV-0167844_38	UniRef90	UniRef90_W0FMR2	HTH cro/C1-type domain-containing protein	NA
UHGV-0167844_38	eggNOG-mapper	521095.Apar_0597	sequence-specific DNA binding	NA
UHGV-0167844_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167844_38	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0167844_38	Structural annotation	PF14590, TIGR03070, COG2944	NA	NA
UHGV-0167844_40	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0167844_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0167844_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0167844_42	UniRef90	UniRef90_UPI000B1DE676	recombinase family protein	NA
UHGV-0167844_42	eggNOG-mapper	1121335.Clst_2051	Resolvase, N terminal domain	NA
UHGV-0167844_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0167844_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0167844_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0167844_42	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0167844_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0167844_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0167844_43	UniRef90	UniRef90_A0A3N0AHC7	HTH cro/C1-type domain-containing protein	NA
UHGV-0167844_43	eggNOG-mapper	521095.Apar_0551	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0167844_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167844_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0167844_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0167844_44	UniRef90	UniRef90_A0A7U9X2F2	HTH cro/C1-type domain-containing protein	NA
UHGV-0167844_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0167844_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0167844_47	PHROG	phrog_674	NA	unknown function
UHGV-0167844_47	UniRef90	UniRef90_UPI0009306B6F	NA	NA
UHGV-0167844_47	eggNOG-mapper	479437.Elen_2601	NA	NA
UHGV-0167844_47	Pfam	PF02037	SAP domain	SAP
UHGV-0167844_47	Pfam	PF07083	NA	DUF1351
UHGV-0167844_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0167844_48	UniRef90	UniRef90_A0A3N0AGG9	Recombinase	NA
UHGV-0167844_48	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0167844_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0167844_48	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0167844_49	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0167844_49	eggNOG-mapper	718252.FP2_01040	NA	NA
UHGV-0167844_49	Pfam	PF05772	NinB protein	NinB
UHGV-0167844_49	Structural annotation	NF007281	NA	NA
UHGV-0167844_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0167844_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0167844_50	UniRef90	UniRef90_R7CJ90	Single-stranded DNA-binding protein	NA
UHGV-0167844_50	eggNOG-mapper	742818.HMPREF9451_01652	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0167844_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0167844_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0167844_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0167844_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0167844_50	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0167844_51	PHROG	phrog_15768	NA	unknown function
UHGV-0167844_51	eggNOG-mapper	742722.HMPREF9463_00205	NA	NA
UHGV-0167844_51	Structural annotation	PF19808	NA	NA
UHGV-0167844_52	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0167844_52	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167844_52	UniRef90	UniRef90_UPI0013EA3259	ATP-binding protein	NA
UHGV-0167844_52	eggNOG-mapper	479437.Elen_2606	IstB-like ATP binding protein	NA
UHGV-0167844_52	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0167844_52	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0167844_54	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0167844_54	UniRef90	UniRef90_A0A3N0AG95	Holliday junction resolvase RecU	NA
UHGV-0167844_54	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0167844_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0167844_55	UniRef90	UniRef90_A0A437UTS5	NA	NA
UHGV-0167844_55	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0167844_56	KOfam	K06940	NA	NA
UHGV-0167844_56	PHROG	phrog_32498	NA	unknown function
UHGV-0167844_56	UniRef90	UniRef90_A0A5K1JEP9	Flagellin N-methylase	NA
UHGV-0167844_56	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0167844_56	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0167844_57	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0167844_57	PHROG	phrog_7713	NA	unknown function
UHGV-0167844_57	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide