UHGV-0167968

Genome information

Genome length 41,824 bps

CDS count 72

Completeness 99.26% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0167968
vOTU ID	vOTU-009239
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_507491
BioSample	SAMN06165194
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.36
Jumbo phage	No

Genome content
Genome length	41,824 bps
GC content	53.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.07%
Average CDS length	520.08 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0167968_2	PHROG	phrog_15303	NA	unknown function
UHGV-0167968_4	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0167968_4	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0167968_6	PHROG	phrog_3754	NA	unknown function
UHGV-0167968_6	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0167968_7	PHROG	phrog_21718	NA	unknown function
UHGV-0167968_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0167968_8	PHROG	phrog_22984	NA	unknown function
UHGV-0167968_9	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0167968_9	UniRef90	UniRef90_UPI0009BE3C76	NUMOD4 domain-containing protein	NA
UHGV-0167968_9	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0167968_9	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0167968_9	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0167968_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0167968_9	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0167968_10	PHROG	phrog_16490	NA	unknown function
UHGV-0167968_10	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0167968_12	PHROG	phrog_20016	NA	unknown function
UHGV-0167968_12	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0167968_12	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0167968_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0167968_13	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0167968_13	Structural annotation	PF12510	NA	NA
UHGV-0167968_15	KOfam	K14059	int; integrase	NA
UHGV-0167968_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0167968_15	UniRef90	UniRef90_A0A174D176	Tyrosine recombinase XerD	NA
UHGV-0167968_15	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0167968_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0167968_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0167968_15	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0167968_16	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0167968_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0167968_16	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0167968_22	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0167968_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0167968_22	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0167968_22	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0167968_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0167968_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0167968_22	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0167968_23	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-0167968_23	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0167968_25	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0167968_25	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0167968_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0167968_28	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0167968_28	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0167968_28	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0167968_28	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0167968_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0167968_28	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0167968_28	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0167968_28	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0167968_30	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0167968_31	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0167968_32	Structural annotation	PF09537	NA	NA
UHGV-0167968_34	Structural annotation	PF14120	NA	NA
UHGV-0167968_36	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0167968_36	UniRef90	UniRef90_A0A1G8PW75	RecT family protein	NA
UHGV-0167968_36	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0167968_36	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0167968_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0167968_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0167968_37	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0167968_37	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0167968_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0167968_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0167968_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0167968_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0167968_37	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0167968_38	PHROG	phrog_14105	NA	unknown function
UHGV-0167968_38	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0167968_38	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0167968_38	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0167968_39	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0167968_39	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0167968_39	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0167968_39	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0167968_39	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0167968_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0167968_39	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0167968_42	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0167968_42	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0167968_42	UniRef90	UniRef90_A0A844DI13	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0167968_42	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0167968_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0167968_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0167968_42	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0167968_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0167968_44	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0167968_44	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0167968_44	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0167968_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0167968_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0167968_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0167968_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0167968_46	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0167968_46	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0167968_47	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0167968_47	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0167968_47	Structural annotation	PF04218	NA	NA
UHGV-0167968_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0167968_48	PHROG	phrog_10250	NA	unknown function
UHGV-0167968_48	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0167968_48	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0167968_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0167968_48	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0167968_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0167968_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0167968_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0167968_49	PHROG	phrog_64	portal protein	head and packaging
UHGV-0167968_49	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0167968_49	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0167968_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0167968_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0167968_50	Structural annotation	PF08863, MF_01077	NA	NA
UHGV-0167968_51	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0167968_51	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0167968_51	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0167968_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0167968_51	COG	COG2369	NA	NA
UHGV-0167968_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0167968_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0167968_52	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0167968_52	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0167968_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0167968_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0167968_54	Structural annotation	PF06810	NA	NA
UHGV-0167968_55	PHROG	phrog_544	major head protein	head and packaging
UHGV-0167968_55	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0167968_55	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0167968_55	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0167968_57	PHROG	phrog_17977	NA	unknown function
UHGV-0167968_57	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0167968_57	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0167968_57	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0167968_58	Structural annotation	PF13554	NA	NA
UHGV-0167968_59	PHROG	phrog_885	major tail protein	tail
UHGV-0167968_59	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0167968_59	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0167968_59	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0167968_59	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0167968_61	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0167968_61	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0167968_61	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0167968_61	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0167968_61	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0167968_61	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0167968_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0167968_62	PHROG	phrog_3558	tail protein	tail
UHGV-0167968_62	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0167968_62	eggNOG-mapper	658088.HMPREF0987_01107	Prophage endopeptidase tail	NA
UHGV-0167968_62	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0167968_62	COG	COG4926	Phage-related protein	NA
UHGV-0167968_62	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0167968_64	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0167968_64	COG	COG4722	Phage-related protein YomH	NA
UHGV-0167968_64	Structural annotation	PF11681, TIGR01633, COG4722	NA	NA
UHGV-0167968_66	PHROG	phrog_19280	NA	unknown function
UHGV-0167968_66	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-0167968_66	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-0167968_66	Pfam	PF19789	NA	DUF6273
UHGV-0167968_66	Structural annotation	PF19789	NA	NA
UHGV-0167968_67	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0167968_67	eggNOG-mapper	1226322.HMPREF1545_03569	NA	NA
UHGV-0167968_67	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0167968_69	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0167968_69	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0167968_69	UniRef90	UniRef90_A0A844D6B7	Reverse transcriptase domain-containing protein	NA
UHGV-0167968_69	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0167968_69	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0167968_69	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0167968_69	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0167968_69	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0167968_71	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-0167968_71	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0167968_71	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0167968_72	KOfam	K07273	acm; lysozyme	NA
UHGV-0167968_72	PHROG	phrog_291	endolysin	lysis
UHGV-0167968_72	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0167968_72	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0167968_72	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0167968_72	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0167968_72	Structural annotation	PF01183, COG3757	NA	NA