UHGV-0168132

Genome information

Genome length 26,785 bps

CDS count 48

Completeness 68.73% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168132
vOTU ID	vOTU-028372
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539001
BioSample	SAMN06328422
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.01
Jumbo phage	No

Genome content
Genome length	26,785 bps
GC content	43.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	88.28%
Average CDS length	496.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168132_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0168132_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0168132_1	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0168132_1	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0168132_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0168132_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0168132_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0168132_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0168132_2	PHROG	phrog_5783	NA	unknown function
UHGV-0168132_2	UniRef90	UniRef90_UPI0011113D11	NYN domain-containing protein	NA
UHGV-0168132_2	eggNOG-mapper	796942.HMPREF9623_01145	NYN domain	NA
UHGV-0168132_2	Pfam	PF01936	NYN domain	NYN
UHGV-0168132_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0168132_2	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0168132_4	PHROG	phrog_87	metallo-protease	other
UHGV-0168132_4	UniRef90	UniRef90_A0A396LGB6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0168132_4	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0168132_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0168132_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0168132_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0168132_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0168132_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0168132_5	UniRef90	UniRef90_A0A395YGB9	XRE family transcriptional regulator	NA
UHGV-0168132_5	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0168132_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168132_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168132_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0168132_6	UniRef90	UniRef90_A0A395YD28	XRE family transcriptional regulator	NA
UHGV-0168132_6	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0168132_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0168132_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0168132_8	PHROG	phrog_28292	NA	unknown function
UHGV-0168132_8	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0168132_8	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0168132_9	PHROG	phrog_14088	NA	unknown function
UHGV-0168132_9	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0168132_9	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0168132_10	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168132_10	UniRef90	UniRef90_A0A391NZN5	NA	NA
UHGV-0168132_10	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0168132_10	Pfam	PF13643	NA	DUF4145
UHGV-0168132_10	Structural annotation	COG2250	NA	NA
UHGV-0168132_14	UniRef90	UniRef90_UPI000B82F4E5	polyprenyl synthetase solanesyl diphosphate synthase	NA
UHGV-0168132_14	eggNOG-mapper	1304866.K413DRAFT_3062	NA	NA
UHGV-0168132_14	Structural annotation	PF20063, TIGR01764	NA	NA
UHGV-0168132_16	PHROG	phrog_3777	NA	unknown function
UHGV-0168132_16	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0168132_16	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0168132_16	Pfam	PF12957	NA	DUF3846
UHGV-0168132_17	PHROG	phrog_674	NA	unknown function
UHGV-0168132_17	UniRef90	UniRef90_UPI00156E73A9	NA	NA
UHGV-0168132_17	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-0168132_17	Pfam	PF07083	NA	DUF1351
UHGV-0168132_17	Structural annotation	PF07083	NA	NA
UHGV-0168132_18	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0168132_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168132_19	UniRef90	UniRef90_A0A1C5ULR1	ERF superfamily	NA
UHGV-0168132_19	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0168132_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0168132_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0168132_19	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0168132_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0168132_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168132_20	UniRef90	UniRef90_A0A1C5UKS1	Single-stranded DNA-binding protein	NA
UHGV-0168132_20	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0168132_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0168132_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0168132_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0168132_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0168132_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0168132_21	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0168132_21	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-0168132_21	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0168132_21	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0168132_21	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0168132_22	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0168132_22	PHROG	phrog_11992	NA	unknown function
UHGV-0168132_22	UniRef90	UniRef90_A0A1C5ULD6	DNA primase	NA
UHGV-0168132_22	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0168132_22	PADLOC	drt-UG29	DRT	DRT
UHGV-0168132_22	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0168132_22	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0168132_22	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0168132_23	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0168132_23	UniRef90	UniRef90_A0A1C5UL65	Superfamily II helicase and inactivated derivatives	NA
UHGV-0168132_23	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0168132_23	Pfam	PF06048	NA	DUF927
UHGV-0168132_23	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0168132_23	COG	COG5519	NA	NA
UHGV-0168132_23	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0168132_24	PHROG	phrog_23374	NA	unknown function
UHGV-0168132_25	PHROG	phrog_3253	NA	unknown function
UHGV-0168132_25	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0168132_25	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0168132_26	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0168132_26	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0168132_26	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0168132_27	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0168132_29	UniRef90	UniRef90_A0A414W6U1	NA	NA
UHGV-0168132_29	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0168132_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168132_32	UniRef90	UniRef90_A0A412MDT8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0168132_32	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0168132_32	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0168132_32	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0168132_33	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0168132_33	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0168132_33	UniRef90	UniRef90_UPI00164AF235	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0168132_33	eggNOG-mapper	397287.C807_02050	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0168132_33	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0168132_33	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0168132_33	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0168132_34	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0168132_34	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0168132_34	UniRef90	UniRef90_UPI0009302C41	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0168132_34	eggNOG-mapper	1235792.C808_04137	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0168132_34	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0168132_34	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0168132_34	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0168132_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0168132_35	UniRef90	UniRef90_A0A3R6JYW4	XRE family transcriptional regulator	NA
UHGV-0168132_35	eggNOG-mapper	997296.PB1_16114	Protein conserved in bacteria	NA
UHGV-0168132_35	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0168132_35	COG	COG1426	NA	NA
UHGV-0168132_35	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0168132_36	PHROG	phrog_1914	NA	unknown function
UHGV-0168132_36	UniRef90	UniRef90_A0A0U5PIP9	Peptidase_M78 domain-containing protein	NA
UHGV-0168132_36	eggNOG-mapper	1235802.C823_05682	NA	NA
UHGV-0168132_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0168132_36	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0168132_36	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-0168132_37	eggNOG-mapper	1123288.SOV_6c00720	NA	NA
UHGV-0168132_38	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0168132_38	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-0168132_38	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-0168132_38	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0168132_38	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0168132_38	COG	COG5484	NA	NA
UHGV-0168132_38	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0168132_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168132_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0168132_39	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-0168132_39	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0168132_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168132_39	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0168132_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0168132_40	UniRef90	UniRef90_A0A413B177	Phage portal protein	NA
UHGV-0168132_40	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0168132_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0168132_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0168132_41	UniRef90	UniRef90_A0A174M1I7	Phage minor capsid protein 2	NA
UHGV-0168132_41	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0168132_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0168132_41	COG	COG2369	NA	NA
UHGV-0168132_41	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0168132_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0168132_43	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-0168132_43	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0168132_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0168132_43	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0168132_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0168132_44	UniRef90	UniRef90_A0A3R6L2J3	Phage major capsid protein	NA
UHGV-0168132_44	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-0168132_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0168132_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0168132_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0168132_44	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0168132_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0168132_45	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0168132_46	PHROG	phrog_3366	NA	unknown function
UHGV-0168132_46	eggNOG-mapper	573061.Clocel_3539	NA	NA
UHGV-0168132_46	Pfam	PF20536	NA	DUF6751
UHGV-0168132_46	Structural annotation	PF20536	NA	NA
UHGV-0168132_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0168132_47	UniRef90	UniRef90_UPI001E609FF9	minor capsid protein	NA
UHGV-0168132_47	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0168132_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0168132_47	Structural annotation	PF11114	NA	NA