UHGV-0168140

Genome information

Genome length 19,024 bps

CDS count 27

Completeness 59.21% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168140
vOTU ID	vOTU-022362
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_548817
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.57
Jumbo phage	No

Genome content
Genome length	19,024 bps
GC content	37.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	89.25%
Average CDS length	631.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168140_1	PHROG	phrog_2150	terminase	head and packaging
UHGV-0168140_1	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0168140_1	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0168140_1	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0168140_1	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0168140_2	PHROG	phrog_199	holin	lysis
UHGV-0168140_2	UniRef90	UniRef90_A0A843HL15	Phage holin family protein	NA
UHGV-0168140_2	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0168140_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0168140_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0168140_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0168140_3	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0168140_3	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0168140_3	UniRef90	UniRef90_A0A348SZW4	Peptidase_M23 domain-containing protein	NA
UHGV-0168140_3	eggNOG-mapper	1382304.JNIL01000001_gene2694	G5	NA
UHGV-0168140_3	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0168140_3	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0168140_3	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0168140_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0168140_6	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0168140_6	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0168140_6	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0168140_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0168140_7	PHROG	phrog_14988	peptidase	other
UHGV-0168140_7	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0168140_7	eggNOG-mapper	1321778.HMPREF1982_01258	G5	NA
UHGV-0168140_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0168140_7	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0168140_8	PHROG	phrog_2248	tail protein	tail
UHGV-0168140_8	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0168140_8	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0168140_8	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0168140_8	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0168140_8	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0168140_9	PHROG	phrog_2038	upper collar connector	connector
UHGV-0168140_9	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0168140_9	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0168140_9	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0168140_10	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0168140_10	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0168140_13	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0168140_14	Pfam	PF06715	Gp5 C-terminal repeat (3 copies)	Gp5_C
UHGV-0168140_14	Structural annotation	PF12708, TIGR04247, COG3420	NA	NA
UHGV-0168140_15	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0168140_15	UniRef90	UniRef90_UPI000C33D3FE	SpoVG family protein	NA
UHGV-0168140_15	eggNOG-mapper	1089553.Tph_c07250	Could be involved in septation	NA
UHGV-0168140_15	Pfam	PF04026	SpoVG	SpoVG
UHGV-0168140_15	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0168140_15	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0168140_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0168140_16	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0168140_27	Structural annotation	PF17548	NA	NA