UHGV-0168230

Genome information

Genome length 36,491 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168230
vOTU ID	vOTU-059601
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_543563
BioSample	SAMN06328492
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.74
Jumbo phage	No

Genome content
Genome length	36,491 bps
GC content	28.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.21%
Average CDS length	533.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168230_1	KOfam	K14059	int; integrase	NA
UHGV-0168230_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0168230_1	UniRef90	UniRef90_R5XPH3	Integrase family protein	NA
UHGV-0168230_1	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0168230_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0168230_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0168230_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0168230_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0168230_2	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-0168230_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0168230_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0168230_3	UniRef90	UniRef90_R7F6V6	LexA repressor	NA
UHGV-0168230_3	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0168230_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0168230_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0168230_4	eggNOG-mapper	883156.HMPREF9282_01207	Helix-turn-helix XRE-family like proteins	NA
UHGV-0168230_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168230_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0168230_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0168230_5	UniRef90	UniRef90_R7FFQ7	Transcriptional regulator	NA
UHGV-0168230_5	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0168230_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0168230_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168230_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0168230_8	PHROG	phrog_5663	NA	unknown function
UHGV-0168230_8	UniRef90	UniRef90_UPI0002E5D838	NA	NA
UHGV-0168230_8	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0168230_8	Pfam	PF10386	NA	DUF2441
UHGV-0168230_8	Structural annotation	PF10386	NA	NA
UHGV-0168230_11	PHROG	phrog_674	NA	unknown function
UHGV-0168230_11	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0168230_11	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0168230_11	Pfam	PF07083	NA	DUF1351
UHGV-0168230_11	Structural annotation	PF07083	NA	NA
UHGV-0168230_12	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168230_12	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0168230_12	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0168230_12	Pfam	PF03837	RecT family	RecT
UHGV-0168230_12	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0168230_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0168230_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0168230_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0168230_13	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-0168230_13	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0168230_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0168230_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0168230_13	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0168230_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0168230_14	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0168230_14	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0168230_14	Structural annotation	PF05772	NA	NA
UHGV-0168230_15	PHROG	phrog_7566	NA	unknown function
UHGV-0168230_16	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0168230_16	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0168230_16	UniRef90	UniRef90_R6N6L5	DnaD domain protein	NA
UHGV-0168230_16	eggNOG-mapper	1158294.JOMI01000009_gene1122	NA	NA
UHGV-0168230_16	Pfam	PF19808	NA	DUF6291
UHGV-0168230_16	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0168230_16	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0168230_16	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0168230_17	Structural annotation	PF11417	NA	NA
UHGV-0168230_18	PHROG	phrog_4973	NA	unknown function
UHGV-0168230_18	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0168230_18	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0168230_18	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-0168230_19	UniRef90	UniRef90_A9U7U9	Predicted protein (Fragment)	NA
UHGV-0168230_19	eggNOG-mapper	1444310.JANV01000162_gene1216	NA	NA
UHGV-0168230_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168230_20	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0168230_20	eggNOG-mapper	1111134.HMPREF1253_1197	NA	NA
UHGV-0168230_20	Pfam	PF06356	NA	DUF1064
UHGV-0168230_20	Structural annotation	PF06356	NA	NA
UHGV-0168230_22	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-0168230_24	PHROG	phrog_7175	NA	unknown function
UHGV-0168230_37	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0168230_38	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0168230_38	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0168230_38	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0168230_38	Pfam	PF14359	NA	DUF4406
UHGV-0168230_38	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0168230_42	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0168230_42	UniRef90	UniRef90_UPI00096A3CF7	transposase	NA
UHGV-0168230_42	eggNOG-mapper	1262449.CP6013_3189	transposase activity	NA
UHGV-0168230_42	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0168230_42	Structural annotation	PF07141	NA	NA
UHGV-0168230_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168230_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0168230_43	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0168230_43	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0168230_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0168230_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0168230_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168230_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0168230_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0168230_44	UniRef90	UniRef90_UPI000F520C24	phage portal protein	NA
UHGV-0168230_44	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0168230_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0168230_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0168230_45	UniRef90	UniRef90_R5YW81	Minor capsid 2 protein	NA
UHGV-0168230_45	eggNOG-mapper	1120998.AUFC01000030_gene2233	NA	NA
UHGV-0168230_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0168230_45	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0168230_45	COG	COG2369	NA	NA
UHGV-0168230_45	Structural annotation	PF06152, PF18451	NA	NA
UHGV-0168230_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0168230_46	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0168230_46	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0168230_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0168230_46	Structural annotation	PF06810	NA	NA
UHGV-0168230_47	PHROG	phrog_212	major head protein	head and packaging
UHGV-0168230_47	UniRef90	UniRef90_A0A2T3FZ12	Phage capsid protein	NA
UHGV-0168230_47	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0168230_47	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0168230_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0168230_49	Pfam	PF20536	NA	DUF6751
UHGV-0168230_49	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0168230_50	UniRef90	UniRef90_R5YSS3	Minor capsid	NA
UHGV-0168230_50	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0168230_50	Pfam	PF02783	Methyl-coenzyme M reductase beta subunit, N-terminal domain	MCR_beta_N
UHGV-0168230_50	Structural annotation	PF11114	NA	NA
UHGV-0168230_51	PHROG	phrog_3266	tail completion	connector
UHGV-0168230_51	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-0168230_51	Structural annotation	PF12691	NA	NA
UHGV-0168230_52	PHROG	phrog_3099	NA	unknown function
UHGV-0168230_52	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0168230_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0168230_54	PHROG	phrog_706	NA	unknown function
UHGV-0168230_54	UniRef90	UniRef90_R5ZNB7	Putative phage gp15 protein	NA
UHGV-0168230_54	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0168230_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0168230_54	Structural annotation	PF06854	NA	NA
UHGV-0168230_56	PHROG	phrog_35723	NA	unknown function
UHGV-0168230_56	UniRef90	UniRef90_R7BP57	Tape measure domain protein	NA
UHGV-0168230_56	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0168230_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0168230_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0168230_56	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0168230_57	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0168230_60	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0168230_60	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0168230_60	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0168230_61	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0168230_61	Structural annotation	PF02973	NA	NA
UHGV-0168230_64	UniRef90	UniRef90_R6N2A5	SH3b domain-containing protein	NA
UHGV-0168230_64	eggNOG-mapper	661087.HMPREF1008_00908	Papain-like cysteine protease AvrRpt2	NA
UHGV-0168230_64	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0168230_64	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0168230_64	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0168230_64	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA