UHGV-0168234

Genome information

Genome length 38,772 bps

CDS count 54

Completeness 99.28% (high-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168234
vOTU ID	vOTU-059600
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_543558
BioSample	SAMN06328492
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.57
Jumbo phage	No

Genome content
Genome length	38,772 bps
GC content	46.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	87.74%
Average CDS length	633.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168234_1	KOfam	K07576	K07576; metallo-beta-lactamase family protein	NA
UHGV-0168234_1	PHROG	phrog_36352	NA	unknown function
UHGV-0168234_1	UniRef90	UniRef90_A0A1Q6R3I3	MBL fold hydrolase	NA
UHGV-0168234_1	eggNOG-mapper	626939.HMPREF9443_00087	Metallo-beta-lactamase domain protein	NA
UHGV-0168234_1	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0168234_1	Pfam	PF10996	Beta-Casp domain	Beta-Casp
UHGV-0168234_1	Pfam	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain	RMMBL
UHGV-0168234_1	COG	COG1236	RNA processing exonuclease, beta-lactamase fold, Cft2 family	NA
UHGV-0168234_3	Structural annotation	PF15597	NA	NA
UHGV-0168234_4	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0168234_4	Structural annotation	PF21277	NA	NA
UHGV-0168234_5	PHROG	phrog_199	holin	lysis
UHGV-0168234_5	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0168234_5	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0168234_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0168234_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0168234_6	KOfam	K14059	int; integrase	NA
UHGV-0168234_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0168234_6	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0168234_6	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0168234_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0168234_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0168234_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0168234_7	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0168234_7	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0168234_7	eggNOG-mapper	1120985.AUMI01000001_gene2155	NA	NA
UHGV-0168234_7	Pfam	PF14301	NA	DUF4376
UHGV-0168234_7	Structural annotation	PF14301	NA	NA
UHGV-0168234_8	eggNOG-mapper	1009370.ALO_01679	tail collar domain protein	NA
UHGV-0168234_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0168234_9	PHROG	phrog_5717	tail protein	tail
UHGV-0168234_9	UniRef90	UniRef90_G0X4V0	Putative structural protein	NA
UHGV-0168234_9	eggNOG-mapper	1054968.G0X4V0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0168234_10	PHROG	phrog_1101	tail protein	tail
UHGV-0168234_10	UniRef90	UniRef90_H1CYW4	Phage-tail_3 domain-containing protein	NA
UHGV-0168234_10	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0168234_10	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0168234_10	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0168234_10	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0168234_11	eggNOG-mapper	1232428.CAVO010000021_gene792	Putative phage tail protein	NA
UHGV-0168234_11	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA
UHGV-0168234_12	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0168234_12	PHROG	phrog_329	minor tail protein	tail
UHGV-0168234_12	UniRef90	UniRef90_A0A3B9DUZ7	Hydrolase	NA
UHGV-0168234_12	eggNOG-mapper	1232428.CAVO010000021_gene793	NlpC/P60 family	NA
UHGV-0168234_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0168234_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0168234_12	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0168234_13	PHROG	phrog_778	tail assembly protein	tail
UHGV-0168234_13	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0168234_13	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-0168234_13	Pfam	PF09931	NA	DUF2163
UHGV-0168234_13	COG	COG5449	NA	NA
UHGV-0168234_13	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0168234_14	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0168234_14	UniRef90	UniRef90_C9LPA8	TIGR02217 family protein	NA
UHGV-0168234_14	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0168234_14	Pfam	PF09343	NA	DUF2460
UHGV-0168234_14	COG	COG5448	NA	NA
UHGV-0168234_14	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0168234_15	PHROG	phrog_12798	NA	unknown function
UHGV-0168234_15	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0168234_15	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0168234_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0168234_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0168234_15	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0168234_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0168234_17	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0168234_17	Structural annotation	PF19591	NA	NA
UHGV-0168234_18	PHROG	phrog_1407	major tail protein	tail
UHGV-0168234_18	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0168234_18	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0168234_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0168234_18	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0168234_18	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0168234_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0168234_19	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0168234_19	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0168234_19	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0168234_20	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0168234_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0168234_21	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0168234_21	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0168234_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0168234_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0168234_22	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0168234_22	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0168234_22	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0168234_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0168234_23	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0168234_25	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0168234_25	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0168234_25	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0168234_26	PHROG	phrog_145	portal protein	head and packaging
UHGV-0168234_26	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0168234_26	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0168234_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0168234_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0168234_27	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0168234_27	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0168234_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0168234_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0168234_27	COG	COG5410	NA	NA
UHGV-0168234_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0168234_29	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0168234_29	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0168234_29	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0168234_29	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0168234_30	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0168234_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168234_31	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0168234_31	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0168234_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0168234_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0168234_32	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168234_32	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0168234_32	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0168234_32	Pfam	PF06356	NA	DUF1064
UHGV-0168234_32	Structural annotation	PF06356	NA	NA
UHGV-0168234_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0168234_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168234_34	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0168234_34	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0168234_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0168234_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0168234_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0168234_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0168234_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0168234_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0168234_36	UniRef90	UniRef90_UPI001C68A760	NA	NA
UHGV-0168234_36	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0168234_36	Pfam	PF11753	NA	DUF3310
UHGV-0168234_39	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168234_39	eggNOG-mapper	60520.HR47_11980	NA	NA
UHGV-0168234_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0168234_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0168234_40	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0168234_40	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0168234_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0168234_40	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0168234_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0168234_40	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0168234_41	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0168234_41	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0168234_41	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0168234_41	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0168234_41	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0168234_41	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0168234_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0168234_42	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0168234_42	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0168234_43	PHROG	phrog_7566	NA	unknown function
UHGV-0168234_43	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0168234_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168234_44	UniRef90	UniRef90_UPI0015943421	ERF family protein	NA
UHGV-0168234_44	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0168234_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0168234_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0168234_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0168234_45	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0168234_45	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0168234_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0168234_45	Structural annotation	PF05565	NA	NA
UHGV-0168234_47	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0168234_47	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0168234_48	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0168234_49	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168234_49	UniRef90	UniRef90_A0A0M2NHZ6	NA	NA
UHGV-0168234_49	eggNOG-mapper	1540092.A0A0A0RSY9_9CAUD	transferase activity, transferring alkyl or aryl (other than methyl) groups	NA
UHGV-0168234_49	Structural annotation	PF17375	NA	NA
UHGV-0168234_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0168234_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0168234_50	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-0168234_50	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0168234_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0168234_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0168234_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0168234_50	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0168234_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0168234_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0168234_51	UniRef90	UniRef90_H3K591	HTH cro/C1-type domain-containing protein	NA
UHGV-0168234_51	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0168234_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168234_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0168234_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0168234_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0168234_52	UniRef90	UniRef90_A0A120KRD9	HTH cro/C1-type domain-containing protein	NA
UHGV-0168234_52	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0168234_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0168234_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168234_52	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0168234_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0168234_53	PHROG	phrog_19315	NA	unknown function
UHGV-0168234_53	UniRef90	UniRef90_UPI0006910087	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0168234_53	eggNOG-mapper	386415.NT01CX_2202	NA	NA
UHGV-0168234_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0168234_53	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0168234_53	COG	COG1592	Rubrerythrin	NA
UHGV-0168234_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0168234_54	KOfam	K07497	K07497; putative transposase	NA
UHGV-0168234_54	PHROG	phrog_157	transposase	integration and excision
UHGV-0168234_54	UniRef90	UniRef90_X8K7B7	Integrase core domain protein	NA
UHGV-0168234_54	eggNOG-mapper	1410631.JHWZ01000004_gene1692	Integrase core domain	NA
UHGV-0168234_54	Pfam	PF13333	Integrase core domain	rve_2
UHGV-0168234_54	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0168234_54	Structural annotation	PF00665, NF033546, COG3335	NA	NA