UHGV-0168329

Genome information

Genome length 42,966 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168329
vOTU ID	vOTU-010809
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_551672
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.5
Jumbo phage	No

Genome content
Genome length	42,966 bps
GC content	39.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.78%
Average CDS length	672.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168329_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0168329_2	PHROG	phrog_435	endolysin	lysis
UHGV-0168329_2	UniRef90	UniRef90_D4MWM5	Bacterial SH3 domain./N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0168329_2	eggNOG-mapper	1408823.AXUS01000013_gene1262	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0168329_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0168329_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0168329_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0168329_2	Structural annotation	PF01520, PF08239, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0168329_3	PHROG	phrog_15303	NA	unknown function
UHGV-0168329_3	eggNOG-mapper	1291050.JAGE01000001_gene794	NA	NA
UHGV-0168329_4	PHROG	phrog_937	hemolysin	other
UHGV-0168329_4	eggNOG-mapper	1235792.C808_00576	NA	NA
UHGV-0168329_5	eggNOG-mapper	1123298.KB904077_gene471	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0168329_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0168329_9	PHROG	phrog_18608	NA	unknown function
UHGV-0168329_9	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0168329_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0168329_10	PHROG	phrog_3558	tail protein	tail
UHGV-0168329_10	UniRef90	UniRef90_A0A1Q2C3W1	Prophage_tail domain-containing protein	NA
UHGV-0168329_10	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0168329_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0168329_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0168329_10	COG	COG4926	Phage-related protein	NA
UHGV-0168329_11	PHROG	phrog_3558	tail protein	tail
UHGV-0168329_11	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0168329_11	COG	COG4926	Phage-related protein	NA
UHGV-0168329_11	Structural annotation	PF21683, COG1853	NA	NA
UHGV-0168329_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0168329_12	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0168329_12	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0168329_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0168329_12	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0168329_13	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0168329_13	PHROG	phrog_19074	NA	unknown function
UHGV-0168329_13	UniRef90	UniRef90_A0A1Q6KF40	Phage tail tape measure protein	NA
UHGV-0168329_13	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0168329_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0168329_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0168329_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0168329_13	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0168329_14	PHROG	phrog_706	NA	unknown function
UHGV-0168329_14	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0168329_14	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0168329_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0168329_14	Structural annotation	PF06854	NA	NA
UHGV-0168329_15	PHROG	phrog_4450	NA	unknown function
UHGV-0168329_15	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0168329_15	Pfam	PF20378	NA	DUF6673
UHGV-0168329_15	Structural annotation	PF20378	NA	NA
UHGV-0168329_16	PHROG	phrog_3099	NA	unknown function
UHGV-0168329_16	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0168329_16	eggNOG-mapper	1151292.QEW_4530	NA	NA
UHGV-0168329_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0168329_17	PHROG	phrog_3266	tail completion	connector
UHGV-0168329_17	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0168329_17	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0168329_17	Structural annotation	PF12691	NA	NA
UHGV-0168329_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0168329_18	UniRef90	UniRef90_A0A417USU6	Capsid protein	NA
UHGV-0168329_18	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0168329_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0168329_18	Structural annotation	PF11114	NA	NA
UHGV-0168329_19	PHROG	phrog_3366	NA	unknown function
UHGV-0168329_19	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0168329_19	Pfam	PF20536	NA	DUF6751
UHGV-0168329_19	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0168329_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0168329_20	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0168329_21	PHROG	phrog_247	major head protein	head and packaging
UHGV-0168329_21	UniRef90	UniRef90_A0A417UT84	Phage coat protein	NA
UHGV-0168329_21	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0168329_21	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0168329_21	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0168329_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0168329_22	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0168329_22	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0168329_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0168329_22	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0168329_23	PHROG	phrog_3675	NA	unknown function
UHGV-0168329_23	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0168329_23	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0168329_23	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0168329_23	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0168329_25	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0168329_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0168329_25	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0168329_25	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0168329_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0168329_25	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0168329_25	COG	COG2369	NA	NA
UHGV-0168329_25	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0168329_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0168329_26	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0168329_26	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0168329_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0168329_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0168329_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168329_27	PHROG	phrog_10250	NA	unknown function
UHGV-0168329_27	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0168329_27	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0168329_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0168329_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0168329_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168329_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0168329_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0168329_28	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0168329_28	UniRef90	UniRef90_A0A1Q2CAR6	Phage portal protein	NA
UHGV-0168329_28	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0168329_28	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0168329_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0168329_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0168329_28	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0168329_31	PHROG	phrog_10226	NA	unknown function
UHGV-0168329_31	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0168329_31	Structural annotation	COG4127	NA	NA
UHGV-0168329_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168329_32	UniRef90	UniRef90_A0A416ZS25	NA	NA
UHGV-0168329_32	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0168329_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0168329_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0168329_35	Pfam	PF12664	NA	DUF3789
UHGV-0168329_36	PHROG	phrog_31515	NA	unknown function
UHGV-0168329_37	PHROG	phrog_17690	NA	unknown function
UHGV-0168329_37	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0168329_37	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0168329_38	PHROG	phrog_17690	NA	unknown function
UHGV-0168329_39	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0168329_39	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0168329_39	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-0168329_39	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-0168329_39	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0168329_39	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0168329_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0168329_39	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0168329_39	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0168329_40	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168329_40	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-0168329_40	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0168329_41	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0168329_41	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0168329_41	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-0168329_41	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0168329_41	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0168329_41	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0168329_42	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0168329_42	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0168329_42	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-0168329_42	eggNOG-mapper	1449126.JQKL01000006_gene840	DNA polymerase	NA
UHGV-0168329_42	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0168329_42	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0168329_42	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0168329_43	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168329_43	UniRef90	UniRef90_UPI0010FE637C	NA	NA
UHGV-0168329_43	eggNOG-mapper	1117108.PAALTS15_09990	NA	NA
UHGV-0168329_43	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0168329_43	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0168329_44	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168329_44	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-0168329_44	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-0168329_44	Pfam	PF10926	NA	DUF2800
UHGV-0168329_44	COG	COG2887	RecB family exonuclease	NA
UHGV-0168329_44	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0168329_45	PHROG	phrog_18562	NA	unknown function
UHGV-0168329_45	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-0168329_50	PHROG	phrog_6058	NA	unknown function
UHGV-0168329_50	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0168329_50	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0168329_52	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0168329_52	UniRef90	UniRef90_L1Q6Z0	DNA-binding helix-turn-helix protein	NA
UHGV-0168329_52	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0168329_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0168329_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168329_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168329_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0168329_53	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0168329_53	UniRef90	UniRef90_A0A374AM30	XRE family transcriptional regulator	NA
UHGV-0168329_53	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0168329_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168329_53	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0168329_53	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0168329_54	PHROG	phrog_87	metallo-protease	other
UHGV-0168329_54	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0168329_54	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0168329_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0168329_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0168329_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0168329_55	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0168329_55	UniRef90	UniRef90_UPI00191E8510	Ltp family lipoprotein	NA
UHGV-0168329_55	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0168329_55	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0168329_55	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0168329_55	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0168329_56	KOfam	K14059	int; integrase	NA
UHGV-0168329_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0168329_56	UniRef90	UniRef90_UPI001EDF286E	tyrosine-type recombinase/integrase	NA
UHGV-0168329_56	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0168329_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0168329_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0168329_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0168329_57	KOfam	K01462	PDF, def; peptide deformylase [EC:3.5.1.88]	NA
UHGV-0168329_57	PHROG	phrog_2890	peptide deformylase	other
UHGV-0168329_57	UniRef90	UniRef90_D4N0J6	N-formylmethionyl-tRNA deformylase	NA
UHGV-0168329_57	eggNOG-mapper	397288.C806_02914	Removes the formyl group from the N-terminal Met of newly synthesized proteins	NA
UHGV-0168329_57	Pfam	PF01327	Polypeptide deformylase	Pep_deformylase
UHGV-0168329_57	NCBIFam	NF006670.0	peptide deformylase	NA
UHGV-0168329_57	COG	COG0242	Peptide deformylase	NA
UHGV-0168329_57	Structural annotation	PF01327, MF_00163, NF006670, COG0242	NA	NA
UHGV-0168329_58	UniRef90	UniRef90_L1Q6D9	Methyltransf_25 domain-containing protein	NA
UHGV-0168329_58	eggNOG-mapper	411462.DORLON_01587	NA	NA
UHGV-0168329_58	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0168329_58	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-0168329_59	UniRef90	UniRef90_E5VPM7	Transcriptional repressor nrdR	NA
UHGV-0168329_59	eggNOG-mapper	1121115.AXVN01000048_gene1276	NA	NA