UHGV-0168367

Genome information

Genome length 34,897 bps

CDS count 57

Completeness 87.73% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168367
vOTU ID	vOTU-018316
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_542791
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.83
Jumbo phage	No

Genome content
Genome length	34,897 bps
GC content	42.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.68%
Average CDS length	573.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168367_1	UniRef90	UniRef90_A0A2N5P4Q1	ATP-dependent RNA helicase	NA
UHGV-0168367_1	eggNOG-mapper	1235798.C817_01146	NA	NA
UHGV-0168367_2	PHROG	phrog_1382	NA	unknown function
UHGV-0168367_2	eggNOG-mapper	742740.HMPREF9474_02334	NA	NA
UHGV-0168367_2	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0168367_2	Structural annotation	NF040910	NA	NA
UHGV-0168367_3	PHROG	phrog_1382	NA	unknown function
UHGV-0168367_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0168367_3	Structural annotation	NF040910	NA	NA
UHGV-0168367_4	PHROG	phrog_12931	NA	unknown function
UHGV-0168367_4	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-0168367_4	Structural annotation	PF17642	NA	NA
UHGV-0168367_5	PHROG	phrog_9994	NA	unknown function
UHGV-0168367_5	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0168367_5	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0168367_5	Structural annotation	PF20747, PF13157, TIGR04362	NA	NA
UHGV-0168367_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0168367_6	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0168367_6	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0168367_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0168367_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0168367_7	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0168367_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0168367_8	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0168367_8	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-0168367_8	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0168367_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0168367_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0168367_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0168367_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0168367_10	PHROG	phrog_1021	NA	unknown function
UHGV-0168367_10	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0168367_11	PHROG	phrog_885	major tail protein	tail
UHGV-0168367_11	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0168367_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0168367_12	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0168367_12	Structural annotation	PF12691	NA	NA
UHGV-0168367_13	UniRef90	UniRef90_UPI001379FEE4	HK97 gp10 family phage protein	NA
UHGV-0168367_13	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0168367_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0168367_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0168367_14	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0168367_14	UniRef90	UniRef90_UPI001373E6F4	head-tail adaptor protein	NA
UHGV-0168367_14	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0168367_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0168367_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0168367_15	PHROG	phrog_1236	head protein	head and packaging
UHGV-0168367_15	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0168367_15	Structural annotation	PF05135	NA	NA
UHGV-0168367_17	PHROG	phrog_212	major head protein	head and packaging
UHGV-0168367_17	UniRef90	UniRef90_A0A3C0QMG6	Phage capsid protein	NA
UHGV-0168367_17	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0168367_17	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0168367_17	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0168367_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0168367_18	UniRef90	UniRef90_UPI00137B133A	phage scaffolding protein	NA
UHGV-0168367_18	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0168367_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0168367_18	Structural annotation	PF06810	NA	NA
UHGV-0168367_20	PHROG	phrog_14030	NA	unknown function
UHGV-0168367_20	UniRef90	UniRef90_A0A3E4VCJ7	Peptidoglycan-binding protein	NA
UHGV-0168367_20	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0168367_20	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0168367_20	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0168367_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0168367_20	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0168367_21	PHROG	phrog_1129	holin	lysis
UHGV-0168367_21	UniRef90	UniRef90_UPI000E5CE6BF	phage holin family protein	NA
UHGV-0168367_21	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0168367_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0168367_21	Structural annotation	PF06946	NA	NA
UHGV-0168367_22	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0168367_23	eggNOG-mapper	476272.RUMHYD_02848	NA	NA
UHGV-0168367_23	Structural annotation	PF16244	NA	NA
UHGV-0168367_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0168367_24	UniRef90	UniRef90_A0A822LMA1	Phage protein F-like protein	NA
UHGV-0168367_24	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0168367_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0168367_24	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0168367_24	COG	COG2369	NA	NA
UHGV-0168367_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0168367_25	UniRef90	UniRef90_UPI000E5D0BC3	phage portal protein	NA
UHGV-0168367_25	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0168367_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0168367_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0168367_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168367_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0168367_26	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0168367_26	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0168367_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0168367_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0168367_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0168367_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168367_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0168367_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0168367_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0168367_27	UniRef90	UniRef90_U2PKP2	Terminase small subunit	NA
UHGV-0168367_27	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0168367_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0168367_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0168367_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0168367_28	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0168367_29	PHROG	phrog_7024	NA	unknown function
UHGV-0168367_29	eggNOG-mapper	1120978.KB894083_gene919	NA	NA
UHGV-0168367_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168367_30	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0168367_30	eggNOG-mapper	742740.HMPREF9474_02360	NA	NA
UHGV-0168367_30	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0168367_32	PHROG	phrog_15198	NA	unknown function
UHGV-0168367_32	UniRef90	UniRef90_UPI000CF8F0F1	NA	NA
UHGV-0168367_32	eggNOG-mapper	1262914.BN533_01384	NA	NA
UHGV-0168367_32	Pfam	PF07866	NA	DUF1653
UHGV-0168367_32	Pfam	PF04448	NA	DUF551
UHGV-0168367_32	COG	COG4728	NA	NA
UHGV-0168367_33	PHROG	phrog_22292	NA	unknown function
UHGV-0168367_33	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0168367_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0168367_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0168367_35	UniRef90	UniRef90_UPI001EDCEC57	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0168367_35	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0168367_35	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0168367_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0168367_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0168367_35	Structural annotation	PF01507, MF_00063, TIGR02039, COG0175	NA	NA
UHGV-0168367_36	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0168367_36	UniRef90	UniRef90_UPI001D099DE7	replisome organizer	NA
UHGV-0168367_36	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0168367_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0168367_36	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0168367_37	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168367_37	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0168367_37	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0168367_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0168367_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168367_38	UniRef90	UniRef90_UPI00156F1EC1	single-stranded DNA-binding protein	NA
UHGV-0168367_38	eggNOG-mapper	500632.CLONEX_02071	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0168367_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0168367_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0168367_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0168367_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0168367_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0168367_39	PHROG	phrog_1029	NA	unknown function
UHGV-0168367_39	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0168367_39	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0168367_39	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0168367_40	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0168367_40	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0168367_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0168367_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168367_41	UniRef90	UniRef90_UPI00156E98BD	recombinase RecT	NA
UHGV-0168367_41	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0168367_41	Pfam	PF03837	RecT family	RecT
UHGV-0168367_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0168367_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0168367_41	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0168367_43	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0168367_43	PHROG	phrog_674	NA	unknown function
UHGV-0168367_43	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0168367_43	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0168367_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0168367_43	Pfam	PF07083	NA	DUF1351
UHGV-0168367_44	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0168367_44	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0168367_44	UniRef90	UniRef90_A0A7X6WTQ7	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-0168367_44	eggNOG-mapper	1384065.JAGS01000001_gene3108	C-5 cytosine-specific DNA methylase	NA
UHGV-0168367_44	PADLOC	oMTase_00016	orphan methyltransferase	RM
UHGV-0168367_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0168367_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0168367_44	Structural annotation	PF13847, NF000058, COG2242	NA	NA
UHGV-0168367_45	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168367_45	UniRef90	UniRef90_A0A844E6Y4	Recombinase	NA
UHGV-0168367_45	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0168367_45	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0168367_45	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0168367_45	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0168367_45	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0168367_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0168367_48	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0168367_48	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-0168367_48	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0168367_48	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0168367_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0168367_48	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0168367_48	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0168367_52	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0168367_55	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0168367_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0168367_55	UniRef90	UniRef90_UPI001BC85B83	helix-turn-helix domain-containing protein	NA
UHGV-0168367_55	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0168367_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168367_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168367_55	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0168367_56	UniRef90	UniRef90_UPI00189DFA3E	SAP domain-containing protein	NA
UHGV-0168367_56	eggNOG-mapper	1304866.K413DRAFT_1250	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0168367_57	KOfam	K14059	int; integrase	NA
UHGV-0168367_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0168367_57	UniRef90	UniRef90_A0A3R5Y1X3	Site-specific integrase	NA
UHGV-0168367_57	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0168367_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0168367_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0168367_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA