UHGV-0168436

Genome information

Genome length 34,808 bps

CDS count 57

Completeness 71.86% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168436
vOTU ID	vOTU-028378
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_544463
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.56
Jumbo phage	No

Genome content
Genome length	34,808 bps
GC content	42.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.09%
Average CDS length	561.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168436_1	eggNOG-mapper	755731.Clo1100_3791	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0168436_1	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0168436_2	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0168436_2	PHROG	phrog_380	endolysin	lysis
UHGV-0168436_2	UniRef90	UniRef90_A0A413SP99	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0168436_2	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0168436_2	Pfam	PF01476	LysM domain	LysM
UHGV-0168436_2	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0168436_2	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0168436_3	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0168436_3	UniRef90	UniRef90_A0A6L6L8D2	Tape measure protein	NA
UHGV-0168436_3	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0168436_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0168436_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0168436_3	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0168436_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0168436_4	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0168436_4	UniRef90	UniRef90_D4M0Z0	Phage XkdN-like protein	NA
UHGV-0168436_4	eggNOG-mapper	742740.HMPREF9474_02345	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0168436_4	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0168436_4	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0168436_5	PHROG	phrog_365	tail protein	tail
UHGV-0168436_5	UniRef90	UniRef90_A0A7U9X6Z5	Phage-like element PBSX protein XkdM	NA
UHGV-0168436_5	eggNOG-mapper	1235790.C805_00599	Phage tail tube protein	NA
UHGV-0168436_5	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0168436_5	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0168436_6	PHROG	phrog_279	tail sheath	tail
UHGV-0168436_6	UniRef90	UniRef90_A0A6L6XE33	Phage tail protein	NA
UHGV-0168436_6	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0168436_6	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0168436_6	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0168436_6	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0168436_6	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0168436_7	PHROG	phrog_966	NA	unknown function
UHGV-0168436_7	eggNOG-mapper	742740.HMPREF9474_02348	NA	NA
UHGV-0168436_8	PHROG	phrog_525	NA	unknown function
UHGV-0168436_8	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-0168436_8	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-0168436_8	Pfam	PF20765	NA	DUF6838
UHGV-0168436_8	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0168436_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0168436_9	UniRef90	UniRef90_A0A6L6L8L6	HK97 gp10 family phage protein	NA
UHGV-0168436_9	eggNOG-mapper	742740.HMPREF9474_02350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0168436_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0168436_9	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0168436_10	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0168436_10	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0168436_10	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-0168436_10	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0168436_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0168436_11	UniRef90	UniRef90_A0A173S6L1	Phage gp6-like head-tail connector protein	NA
UHGV-0168436_11	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0168436_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0168436_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0168436_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-0168436_12	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-0168436_12	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0168436_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0168436_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0168436_13	UniRef90	UniRef90_A0A173S7H6	Phage minor structural protein GP20	NA
UHGV-0168436_13	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-0168436_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0168436_13	Structural annotation	PF06810	NA	NA
UHGV-0168436_14	Structural annotation	PF20124	NA	NA
UHGV-0168436_15	PHROG	phrog_3675	NA	unknown function
UHGV-0168436_15	UniRef90	UniRef90_A0A174UEP6	YjcQ protein	NA
UHGV-0168436_15	eggNOG-mapper	1029718.SFBM_0119	YjcQ protein	NA
UHGV-0168436_15	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0168436_15	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0168436_17	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0168436_17	UniRef90	UniRef90_A0A413SP88	Phage head morphogenesis protein	NA
UHGV-0168436_17	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0168436_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0168436_17	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0168436_17	COG	COG2369	NA	NA
UHGV-0168436_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0168436_18	PHROG	phrog_1233	NA	unknown function
UHGV-0168436_18	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0168436_18	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0168436_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0168436_19	UniRef90	UniRef90_A0A6L6XEV1	Phage portal protein	NA
UHGV-0168436_19	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0168436_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0168436_19	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0168436_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0168436_20	UniRef90	UniRef90_UPI0015F96457	SLATT domain-containing protein	NA
UHGV-0168436_20	PADLOC	drt-cluster7	DRT	DRT
UHGV-0168436_20	Pfam	PF18160	SMODS and SLOG-associating 2TM effector domain family 5	SLATT_5
UHGV-0168436_20	NCBIFam	NF033631.1	SLATT domain-containing protein	NA
UHGV-0168436_20	Structural annotation	PF18160, NF033631	NA	NA
UHGV-0168436_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168436_21	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0168436_21	UniRef90	UniRef90_A0A6L6L9A4	PBSX family phage terminase large subunit	NA
UHGV-0168436_21	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0168436_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0168436_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0168436_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0168436_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168436_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0168436_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0168436_22	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0168436_22	UniRef90	UniRef90_A0A6L6L9H6	Phage portal protein	NA
UHGV-0168436_22	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0168436_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0168436_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0168436_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0168436_22	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0168436_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168436_24	UniRef90	UniRef90_UPI001F14539B	NA	NA
UHGV-0168436_24	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0168436_24	Pfam	PF07374	NA	DUF1492
UHGV-0168436_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0168436_25	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0168436_26	UniRef90	UniRef90_A0A7W3XTE8	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA
UHGV-0168436_27	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0168436_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0168436_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0168436_28	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0168436_28	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0168436_28	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0168436_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0168436_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0168436_28	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0168436_29	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0168436_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0168436_29	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-0168436_29	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0168436_29	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0168436_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0168436_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-0168436_29	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0168436_30	eggNOG-mapper	97139.C824_05979	NA	NA
UHGV-0168436_31	eggNOG-mapper	1117958.PE143B_0129235	NA	NA
UHGV-0168436_32	KOfam	K07392	PRS2; AAA family ATPase	NA
UHGV-0168436_32	PHROG	phrog_3757	NA	unknown function
UHGV-0168436_32	UniRef90	UniRef90_A0A1Q6KIJ0	AAA domain-containing protein	NA
UHGV-0168436_32	eggNOG-mapper	1235802.C823_01035	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0168436_32	PADLOC	IetA_00002	NA	ietAS
UHGV-0168436_32	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0168436_32	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0168436_32	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0168436_33	PHROG	phrog_874	NA	unknown function
UHGV-0168436_33	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0168436_33	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0168436_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0168436_34	PHROG	phrog_20593	NA	unknown function
UHGV-0168436_35	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0168436_35	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0168436_35	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0168436_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0168436_35	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0168436_35	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0168436_35	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0168436_36	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0168436_37	PHROG	phrog_8684	NA	unknown function
UHGV-0168436_37	UniRef90	UniRef90_A0A6N3H7N5	YopX protein	NA
UHGV-0168436_37	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0168436_37	Pfam	PF09643	YopX protein	YopX
UHGV-0168436_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0168436_38	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0168436_39	PHROG	phrog_22292	NA	unknown function
UHGV-0168436_41	PHROG	phrog_37044	NA	unknown function
UHGV-0168436_41	eggNOG-mapper	397290.C810_00402	NA	NA
UHGV-0168436_42	PHROG	phrog_16304	NA	unknown function
UHGV-0168436_42	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0168436_42	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0168436_42	Pfam	PF19808	NA	DUF6291
UHGV-0168436_42	Structural annotation	PF19808	NA	NA
UHGV-0168436_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0168436_43	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168436_43	UniRef90	UniRef90_A0A415TWS7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0168436_43	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0168436_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0168436_43	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0168436_44	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0168436_44	UniRef90	UniRef90_A0A6N3H967	Bro-N domain-containing protein	NA
UHGV-0168436_44	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0168436_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0168436_44	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0168436_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0168436_44	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0168436_45	PHROG	phrog_7566	NA	unknown function
UHGV-0168436_45	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0168436_46	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168436_46	UniRef90	UniRef90_D4L3P7	NA	NA
UHGV-0168436_46	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-0168436_46	Pfam	PF12684	NA	DUF3799
UHGV-0168436_46	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0168436_46	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0168436_47	PHROG	phrog_3657	NA	unknown function
UHGV-0168436_47	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-0168436_48	PHROG	phrog_1499	NA	unknown function
UHGV-0168436_48	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0168436_48	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0168436_48	PADLOC	AAA_15	NA	NA
UHGV-0168436_48	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0168436_48	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0168436_51	UniRef90	UniRef90_UPI0015D1C8FF	lectin-1	NA
UHGV-0168436_51	Structural annotation	COG3296	NA	NA
UHGV-0168436_52	PHROG	phrog_36464	NA	unknown function
UHGV-0168436_52	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0168436_52	Structural annotation	PF09035	NA	NA
UHGV-0168436_53	PHROG	phrog_4621	NA	unknown function
UHGV-0168436_53	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0168436_56	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0168436_56	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0168436_56	UniRef90	UniRef90_A0A6L6XFS5	Helix-turn-helix domain-containing protein	NA
UHGV-0168436_56	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0168436_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0168436_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168436_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168436_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0168436_57	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0168436_57	UniRef90	UniRef90_A0A6L6XD44	Helix-turn-helix domain-containing protein	NA
UHGV-0168436_57	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0168436_57	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0168436_57	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0168436_57	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA