UHGV-0168806

Genome information

Genome length 30,641 bps

CDS count 45

Completeness 84.74% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168806
vOTU ID	vOTU-028398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_540674
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.23
Jumbo phage	No

Genome content
Genome length	30,641 bps
GC content	49.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.73%
Average CDS length	650.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168806_1	PHROG	phrog_24060	NA	unknown function
UHGV-0168806_1	UniRef90	UniRef90_A0A1Q6KQ89	NA	NA
UHGV-0168806_1	eggNOG-mapper	1226322.HMPREF1545_04029	cellulose binding	NA
UHGV-0168806_1	Pfam	PF19789	NA	DUF6273
UHGV-0168806_1	COG	COG4447	NA	NA
UHGV-0168806_1	Structural annotation	PF19789	NA	NA
UHGV-0168806_2	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0168806_2	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0168806_2	UniRef90	UniRef90_H7BWD2	Reverse transcriptase domain-containing protein	NA
UHGV-0168806_2	eggNOG-mapper	1226322.HMPREF1545_04030	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0168806_2	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0168806_2	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0168806_2	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0168806_2	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0168806_3	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0168806_3	UniRef90	UniRef90_A0A1M6M548	23S rRNA-intervening sequence protein	NA
UHGV-0168806_3	eggNOG-mapper	1226322.HMPREF1545_04032	NA	NA
UHGV-0168806_3	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0168806_4	PHROG	phrog_21058	NA	unknown function
UHGV-0168806_4	eggNOG-mapper	1499689.CCNN01000007_gene1876	ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase protein tyrosine kinase	NA
UHGV-0168806_5	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0168806_5	eggNOG-mapper	1203606.HMPREF1526_00342	NA	NA
UHGV-0168806_5	Structural annotation	PF12571	NA	NA
UHGV-0168806_6	PHROG	phrog_521	tail protein	tail
UHGV-0168806_6	UniRef90	UniRef90_UPI001956D7D3	NA	NA
UHGV-0168806_6	eggNOG-mapper	1226322.HMPREF1545_04034	NA	NA
UHGV-0168806_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0168806_6	COG	COG3778	NA	NA
UHGV-0168806_6	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0168806_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0168806_7	UniRef90	UniRef90_H7BWD5	Baseplate_J domain-containing protein	NA
UHGV-0168806_7	eggNOG-mapper	1226322.HMPREF1545_04035	baseplate J-like protein	NA
UHGV-0168806_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0168806_7	COG	COG3299	NA	NA
UHGV-0168806_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0168806_8	PHROG	phrog_120	baseplate protein	tail
UHGV-0168806_8	UniRef90	UniRef90_U2QSJ0	Phage protein XkdS domain protein	NA
UHGV-0168806_8	eggNOG-mapper	1226322.HMPREF1545_04036	NA	NA
UHGV-0168806_8	Pfam	PF10934	NA	DUF2634
UHGV-0168806_8	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0168806_8	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0168806_9	PHROG	phrog_579	NA	unknown function
UHGV-0168806_9	UniRef90	UniRef90_UPI0006828886	NA	NA
UHGV-0168806_9	eggNOG-mapper	768710.DesyoDRAFT_5157	NA	NA
UHGV-0168806_9	Pfam	PF10844	NA	DUF2577
UHGV-0168806_9	Structural annotation	PF10844	NA	NA
UHGV-0168806_10	PHROG	phrog_400	tail protein	tail
UHGV-0168806_10	UniRef90	UniRef90_W4V9W9	Phage-like element PBSX protein XkdQ	NA
UHGV-0168806_10	eggNOG-mapper	1226322.HMPREF1545_04038	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0168806_10	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0168806_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0168806_11	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0168806_11	PHROG	phrog_380	endolysin	lysis
UHGV-0168806_11	UniRef90	UniRef90_A0A1Q6KQ30	LysM domain-containing protein	NA
UHGV-0168806_11	eggNOG-mapper	1226322.HMPREF1545_04039	LysM domain	NA
UHGV-0168806_11	Pfam	PF01476	LysM domain	LysM
UHGV-0168806_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0168806_11	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0168806_12	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0168806_12	UniRef90	UniRef90_A0A1Q6KQ15	TMP_3 domain-containing protein	NA
UHGV-0168806_12	eggNOG-mapper	1121344.JHZO01000003_gene963	tape measure	NA
UHGV-0168806_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0168806_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0168806_12	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0168806_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0168806_13	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0168806_13	UniRef90	UniRef90_U2QSJ4	Phage XkdN-like protein	NA
UHGV-0168806_13	eggNOG-mapper	1226322.HMPREF1545_04041	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0168806_13	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0168806_13	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0168806_14	PHROG	phrog_365	tail protein	tail
UHGV-0168806_14	UniRef90	UniRef90_A0A1C6AK33	Phage-like element PBSX protein xkdM	NA
UHGV-0168806_14	eggNOG-mapper	1226322.HMPREF1545_04042	Phage tail tube protein	NA
UHGV-0168806_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0168806_14	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0168806_15	PHROG	phrog_279	tail sheath	tail
UHGV-0168806_15	UniRef90	UniRef90_U2QRN1	Tat pathway signal sequence domain protein	NA
UHGV-0168806_15	eggNOG-mapper	1226322.HMPREF1545_04043	PFAM Phage tail sheath protein	NA
UHGV-0168806_15	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0168806_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0168806_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0168806_15	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0168806_16	PHROG	phrog_966	NA	unknown function
UHGV-0168806_16	eggNOG-mapper	357809.Cphy_2959	NA	NA
UHGV-0168806_17	PHROG	phrog_525	NA	unknown function
UHGV-0168806_17	eggNOG-mapper	1226322.HMPREF1545_04045	NA	NA
UHGV-0168806_17	Pfam	PF20765	NA	DUF6838
UHGV-0168806_17	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0168806_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0168806_18	UniRef90	UniRef90_UPI001958CF31	ABC transporter ATP-binding protein	NA
UHGV-0168806_18	eggNOG-mapper	1226322.HMPREF1545_04046	NA	NA
UHGV-0168806_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0168806_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0168806_19	UniRef90	UniRef90_UPI0006821A34	phage head-tail connector protein	NA
UHGV-0168806_19	eggNOG-mapper	1226322.HMPREF1545_04047	NA	NA
UHGV-0168806_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0168806_19	Structural annotation	PF05135	NA	NA
UHGV-0168806_20	Structural annotation	PF12949, PF18885	NA	NA
UHGV-0168806_21	UniRef90	UniRef90_A0A644YJM4	S-l_SbsC_C domain-containing protein	NA
UHGV-0168806_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0168806_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0168806_22	UniRef90	UniRef90_U2S0A2	Putative phage minor structural protein GP20	NA
UHGV-0168806_22	eggNOG-mapper	1118054.CAGW01000102_gene4698	Phage minor structural protein GP20	NA
UHGV-0168806_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0168806_22	Structural annotation	PF06810	NA	NA
UHGV-0168806_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0168806_24	UniRef90	UniRef90_UPI00189A0CB7	minor capsid protein	NA
UHGV-0168806_24	eggNOG-mapper	1226322.HMPREF1545_04053	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0168806_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0168806_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0168806_24	COG	COG2369	NA	NA
UHGV-0168806_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0168806_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0168806_25	UniRef90	UniRef90_UPI001898D14F	phage portal protein	NA
UHGV-0168806_25	eggNOG-mapper	1226322.HMPREF1545_04054	phage portal protein, SPP1	NA
UHGV-0168806_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0168806_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0168806_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168806_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0168806_26	UniRef90	UniRef90_H7BWE9	Terminase_3 domain-containing protein	NA
UHGV-0168806_26	eggNOG-mapper	1226322.HMPREF1545_04055	Phage terminase, large subunit, PBSX family	NA
UHGV-0168806_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0168806_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0168806_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0168806_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168806_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0168806_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0168806_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0168806_27	UniRef90	UniRef90_A0A1Q6KQ99	Terminase small subunit	NA
UHGV-0168806_27	eggNOG-mapper	1226322.HMPREF1545_04056	Terminase Small Subunit	NA
UHGV-0168806_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0168806_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0168806_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0168806_28	Structural annotation	PF04545, TIGR01636	NA	NA
UHGV-0168806_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0168806_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168806_29	UniRef90	UniRef90_A0A1C6AHY8	Single-stranded DNA-binding protein	NA
UHGV-0168806_29	eggNOG-mapper	1226322.HMPREF1545_04059	Single-strand binding protein family	NA
UHGV-0168806_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0168806_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0168806_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0168806_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0168806_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0168806_30	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0168806_30	eggNOG-mapper	1226322.HMPREF1545_04060	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0168806_30	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0168806_30	Structural annotation	COG1694	NA	NA
UHGV-0168806_31	PHROG	phrog_22529	NA	unknown function
UHGV-0168806_31	UniRef90	UniRef90_A0A1Q6KQ40	3D domain-containing protein	NA
UHGV-0168806_31	eggNOG-mapper	1226322.HMPREF1545_04061	protein conserved in bacteria	NA
UHGV-0168806_31	Pfam	PF06725	3D domain	3D
UHGV-0168806_31	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0168806_31	Structural annotation	PF06725, NF040677, COG3584	NA	NA
UHGV-0168806_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0168806_33	eggNOG-mapper	536233.CLO_1554	sulfate reduction	NA
UHGV-0168806_33	PADLOC	SspD_00001	SspD	SSP
UHGV-0168806_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0168806_33	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0168806_34	eggNOG-mapper	445972.ANACOL_03331	NA	NA
UHGV-0168806_35	PHROG	phrog_9958	NA	unknown function
UHGV-0168806_35	UniRef90	UniRef90_A0A1Q6KZ66	NA	NA
UHGV-0168806_35	eggNOG-mapper	1203606.HMPREF1526_01871	cellulase activity	NA
UHGV-0168806_35	Pfam	PF19789	NA	DUF6273
UHGV-0168806_35	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0168806_35	Structural annotation	PF19789	NA	NA
UHGV-0168806_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0168806_36	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168806_36	UniRef90	UniRef90_U2Q8K8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0168806_36	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0168806_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0168806_36	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0168806_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0168806_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0168806_37	UniRef90	UniRef90_H7BWC4	AAA domain-containing protein	NA
UHGV-0168806_37	eggNOG-mapper	1226322.HMPREF1545_04071	IstB-like ATP binding protein	NA
UHGV-0168806_37	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0168806_37	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0168806_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0168806_37	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0168806_38	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0168806_38	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-0168806_38	eggNOG-mapper	1226322.HMPREF1545_04072	HNH endonuclease	NA
UHGV-0168806_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0168806_38	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0168806_39	PHROG	phrog_14970	NA	unknown function
UHGV-0168806_39	UniRef90	UniRef90_A0A015RRM9	Rad52/22 double-strand break repair family protein	NA
UHGV-0168806_39	eggNOG-mapper	1226322.HMPREF1545_04073	double-strand break repair protein	NA
UHGV-0168806_39	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0168806_39	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0168806_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0168806_40	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0168806_40	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0168806_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0168806_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0168806_44	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0168806_44	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168806_44	UniRef90	UniRef90_A0A1Q6KZ75	HTH_38 domain-containing protein	NA
UHGV-0168806_44	eggNOG-mapper	1226322.HMPREF1545_04078	Helix-turn-helix domain	NA
UHGV-0168806_44	Structural annotation	PF13936, COG3415	NA	NA
UHGV-0168806_45	KOfam	K02837	prfC; peptide chain release factor 3	NA
UHGV-0168806_45	PHROG	phrog_6880	translation elongation factor	other
UHGV-0168806_45	UniRef90	UniRef90_A0A8J7RMM5	Peptide chain release factor 3	NA
UHGV-0168806_45	eggNOG-mapper	1121334.KB911070_gene1450	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	NA
UHGV-0168806_45	Pfam	PF00009	Elongation factor Tu GTP binding domain	GTP_EFTU
UHGV-0168806_45	Pfam	PF03144	Elongation factor Tu domain 2	GTP_EFTU_D2
UHGV-0168806_45	Pfam	PF16658	Class II release factor RF3, C-terminal domain	RF3_C
UHGV-0168806_45	NCBIFam	NF001964.0	peptide chain release factor 3	NA
UHGV-0168806_45	COG	COG4108	Peptide chain release factor RF-3	NA
UHGV-0168806_45	HAMAP	MF_00072	Peptide chain release factor 3 [prfC]	NA