UHGV-0168894

Genome information

Genome length 43,019 bps

CDS count 76

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168894
vOTU ID	vOTU-001003
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541702
BioSample	SAMN06328498
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.28
Jumbo phage	No

Genome content
Genome length	43,019 bps
GC content	54.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	89.87%
Average CDS length	511.38 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168894_2	PHROG	phrog_544	major head protein	head and packaging
UHGV-0168894_2	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0168894_2	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0168894_2	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0168894_4	PHROG	phrog_17977	NA	unknown function
UHGV-0168894_4	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0168894_4	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0168894_4	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0168894_5	Structural annotation	PF13554	NA	NA
UHGV-0168894_6	PHROG	phrog_885	major tail protein	tail
UHGV-0168894_6	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0168894_6	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0168894_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0168894_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0168894_9	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0168894_9	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0168894_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0168894_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0168894_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0168894_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0168894_10	PHROG	phrog_3558	tail protein	tail
UHGV-0168894_10	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0168894_10	eggNOG-mapper	658088.HMPREF0987_01107	Prophage endopeptidase tail	NA
UHGV-0168894_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0168894_10	COG	COG4926	Phage-related protein	NA
UHGV-0168894_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0168894_12	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0168894_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0168894_12	Structural annotation	PF11681, TIGR01633, COG4722	NA	NA
UHGV-0168894_14	PHROG	phrog_19280	NA	unknown function
UHGV-0168894_14	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-0168894_14	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-0168894_14	Pfam	PF19789	NA	DUF6273
UHGV-0168894_14	Structural annotation	PF19789	NA	NA
UHGV-0168894_15	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0168894_15	eggNOG-mapper	1226322.HMPREF1545_03569	NA	NA
UHGV-0168894_15	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0168894_17	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0168894_17	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0168894_17	UniRef90	UniRef90_A0A844D6B7	Reverse transcriptase domain-containing protein	NA
UHGV-0168894_17	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0168894_17	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0168894_17	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0168894_17	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0168894_17	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0168894_19	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-0168894_19	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0168894_19	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0168894_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0168894_20	PHROG	phrog_291	endolysin	lysis
UHGV-0168894_20	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0168894_20	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0168894_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0168894_20	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0168894_20	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0168894_22	PHROG	phrog_15303	NA	unknown function
UHGV-0168894_24	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0168894_24	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0168894_26	PHROG	phrog_3754	NA	unknown function
UHGV-0168894_26	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0168894_27	PHROG	phrog_21718	NA	unknown function
UHGV-0168894_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0168894_28	PHROG	phrog_22984	NA	unknown function
UHGV-0168894_29	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168894_29	UniRef90	UniRef90_A0A8I2AQR4	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0168894_29	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0168894_29	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0168894_29	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0168894_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0168894_29	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0168894_30	PHROG	phrog_16490	NA	unknown function
UHGV-0168894_30	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0168894_31	PHROG	phrog_20016	NA	unknown function
UHGV-0168894_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0168894_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0168894_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0168894_32	Structural annotation	PF12510	NA	NA
UHGV-0168894_34	KOfam	K14059	int; integrase	NA
UHGV-0168894_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0168894_34	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-0168894_34	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0168894_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0168894_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0168894_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0168894_34	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0168894_35	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0168894_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168894_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168894_35	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0168894_38	PHROG	phrog_888	NA	unknown function
UHGV-0168894_38	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0168894_38	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0168894_38	Pfam	PF14471	NA	DUF4428
UHGV-0168894_38	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0168894_38	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0168894_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0168894_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0168894_40	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0168894_40	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0168894_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0168894_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0168894_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168894_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0168894_41	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0168894_44	Structural annotation	PF16857, NF001981	NA	NA
UHGV-0168894_48	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0168894_48	UniRef90	UniRef90_A0A3N6C5N5	Bro-N domain-containing protein	NA
UHGV-0168894_48	eggNOG-mapper	476272.RUMHYD_03308	BRO family, N-terminal domain	NA
UHGV-0168894_48	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0168894_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0168894_49	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0168894_49	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0168894_49	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0168894_49	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0168894_50	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0168894_51	Structural annotation	PF09537	NA	NA
UHGV-0168894_55	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168894_55	UniRef90	UniRef90_A0A1G8PW75	RecT family protein	NA
UHGV-0168894_55	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0168894_55	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0168894_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0168894_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0168894_56	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0168894_56	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0168894_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0168894_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0168894_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0168894_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0168894_56	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0168894_57	PHROG	phrog_14105	NA	unknown function
UHGV-0168894_57	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0168894_57	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0168894_57	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0168894_57	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0168894_58	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0168894_58	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0168894_58	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0168894_58	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0168894_58	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0168894_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0168894_58	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0168894_60	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0168894_60	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0168894_60	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0168894_60	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0168894_60	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0168894_62	PHROG	phrog_7711	NA	unknown function
UHGV-0168894_62	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0168894_63	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0168894_63	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168894_63	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0168894_63	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0168894_63	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0168894_63	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0168894_63	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0168894_65	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168894_65	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0168894_65	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0168894_67	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0168894_67	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0168894_67	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0168894_67	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0168894_67	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0168894_67	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0168894_67	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0168894_67	COG	COG1783	Phage terminase large subunit	NA
UHGV-0168894_67	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0168894_68	PHROG	phrog_64	portal protein	head and packaging
UHGV-0168894_68	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0168894_68	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0168894_68	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0168894_68	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0168894_69	Pfam	PF04448	NA	DUF551
UHGV-0168894_70	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0168894_70	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0168894_70	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0168894_70	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0168894_70	COG	COG2369	NA	NA
UHGV-0168894_70	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0168894_72	PHROG	phrog_8680	NA	unknown function
UHGV-0168894_72	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0168894_72	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0168894_72	Pfam	PF14386	NA	DUF4417
UHGV-0168894_72	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0168894_72	Structural annotation	PF14386	NA	NA
UHGV-0168894_74	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0168894_74	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0168894_74	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0168894_74	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0168894_74	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA