UHGV-0168968

Genome information

Genome length 36,598 bps

CDS count 51

Completeness 95.70% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168968
vOTU ID	vOTU-067133
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_555472
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.06
Jumbo phage	No

Genome content
Genome length	36,598 bps
GC content	57.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.22%
Average CDS length	681.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168968_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0168968_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0168968_1	eggNOG-mapper	1145276.T479_19995	Phage terminase, small subunit	NA
UHGV-0168968_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0168968_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0168968_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0168968_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0168968_2	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0168968_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0168968_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0168968_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0168968_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0168968_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0168968_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0168968_3	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0168968_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0168968_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0168968_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0168968_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0168968_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0168968_4	KOfam	K06904	NA	NA
UHGV-0168968_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0168968_4	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0168968_4	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0168968_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0168968_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0168968_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0168968_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0168968_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0168968_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0168968_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0168968_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0168968_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0168968_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0168968_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0168968_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0168968_6	PHROG	phrog_2550	NA	unknown function
UHGV-0168968_6	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0168968_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0168968_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0168968_7	PHROG	phrog_19734	NA	unknown function
UHGV-0168968_7	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0168968_7	eggNOG-mapper	999413.HMPREF1094_02006	NA	NA
UHGV-0168968_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0168968_8	eggNOG-mapper	33035.JPJF01000039_gene276	NA	NA
UHGV-0168968_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0168968_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0168968_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0168968_9	Structural annotation	TIGR01725	NA	NA
UHGV-0168968_10	PHROG	phrog_88	major tail protein	tail
UHGV-0168968_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0168968_10	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0168968_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0168968_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0168968_13	KOfam	K06675	SMC4; structural maintenance of chromosome 4	NA
UHGV-0168968_13	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0168968_13	UniRef90	UniRef90_UPI001C3872C4	tape measure protein	NA
UHGV-0168968_13	eggNOG-mapper	1158606.I579_02099	tape measure	NA
UHGV-0168968_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0168968_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0168968_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0168968_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0168968_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0168968_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0168968_14	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0168968_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0168968_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0168968_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0168968_15	UniRef90	UniRef90_A0A0D8IVK1	Prophage_tail domain-containing protein	NA
UHGV-0168968_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0168968_15	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0168968_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0168968_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0168968_15	COG	COG4926	Phage-related protein	NA
UHGV-0168968_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0168968_20	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0168968_21	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0168968_21	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0168968_21	UniRef90	UniRef90_A0A348SZW4	Peptidase_M23 domain-containing protein	NA
UHGV-0168968_21	eggNOG-mapper	1144305.PMI02_03568	Peptidase family M23	NA
UHGV-0168968_21	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0168968_21	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0168968_21	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0168968_22	PHROG	phrog_4105	NA	unknown function
UHGV-0168968_22	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0168968_23	PHROG	phrog_1129	holin	lysis
UHGV-0168968_23	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0168968_23	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0168968_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0168968_23	Structural annotation	PF06946	NA	NA
UHGV-0168968_24	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0168968_24	UniRef90	UniRef90_A0A4R2JE55	AP2 domain-containing protein	NA
UHGV-0168968_24	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0168968_24	Structural annotation	PF00847	NA	NA
UHGV-0168968_26	eggNOG-mapper	246199.CUS_7734	NA	NA
UHGV-0168968_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0168968_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0168968_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168968_29	KOfam	K14059	int; integrase	NA
UHGV-0168968_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0168968_29	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0168968_29	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0168968_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0168968_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0168968_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0168968_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0168968_30	PHROG	phrog_87	metallo-protease	other
UHGV-0168968_30	UniRef90	UniRef90_D1PLA2	Peptidase_M78 domain-containing protein	NA
UHGV-0168968_30	eggNOG-mapper	411471.SUBVAR_05140	NA	NA
UHGV-0168968_30	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0168968_31	UniRef90	UniRef90_UPI001C3A75DB	Helix-turn-helix transcriptional regulator	NA
UHGV-0168968_31	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0168968_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0168968_32	UniRef90	UniRef90_A0A316SCA5	HTH cro/C1-type domain-containing protein	NA
UHGV-0168968_32	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0168968_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0168968_33	UniRef90	UniRef90_A0A1Y4TJS8	Bro-N domain-containing protein	NA
UHGV-0168968_33	eggNOG-mapper	411470.RUMGNA_00784	BRO family, N-terminal domain	NA
UHGV-0168968_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0168968_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0168968_33	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0168968_34	UniRef90	UniRef90_UPI000A26C8DD	helix-turn-helix domain-containing protein	NA
UHGV-0168968_34	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0168968_35	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0168968_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0168968_37	Structural annotation	PF12957	NA	NA
UHGV-0168968_39	PHROG	phrog_1733	NA	unknown function
UHGV-0168968_39	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-0168968_39	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0168968_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0168968_39	Structural annotation	PF03677	NA	NA
UHGV-0168968_40	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0168968_40	PHROG	phrog_1499	NA	unknown function
UHGV-0168968_40	UniRef90	UniRef90_A0A367GHQ5	Chromosome segregation protein SMC	NA
UHGV-0168968_40	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0168968_40	Pfam	PF13476	AAA domain	AAA_23
UHGV-0168968_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0168968_40	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0168968_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0168968_41	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-0168968_41	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0168968_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0168968_41	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0168968_42	PHROG	phrog_2698	NA	unknown function
UHGV-0168968_42	UniRef90	UniRef90_A0A367GFE7	NA	NA
UHGV-0168968_42	eggNOG-mapper	294382.Q5YA95_9CAUD	NA	NA
UHGV-0168968_42	Structural annotation	PF05037	NA	NA
UHGV-0168968_43	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0168968_43	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0168968_43	UniRef90	UniRef90_A0A367GH68	DEAD/DEAH box helicase	NA
UHGV-0168968_43	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-0168968_43	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0168968_43	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0168968_43	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0168968_43	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0168968_43	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0168968_44	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0168968_44	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0168968_44	UniRef90	UniRef90_A0A367GFF7	DNA primase	NA
UHGV-0168968_44	eggNOG-mapper	742738.HMPREF9460_01357	Primase C terminal 2 (PriCT-2)	NA
UHGV-0168968_44	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0168968_44	Pfam	PF13481	AAA domain	AAA_25
UHGV-0168968_44	COG	COG3598	RecA-family ATPase	NA
UHGV-0168968_44	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0168968_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0168968_45	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0168968_45	UniRef90	UniRef90_UPI001958985E	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0168968_45	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-0168968_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0168968_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0168968_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0168968_47	PHROG	phrog_924	NA	unknown function
UHGV-0168968_47	UniRef90	UniRef90_UPI000D6974D1	NA	NA
UHGV-0168968_47	Pfam	PF04448	NA	DUF551
UHGV-0168968_47	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0168968_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0168968_50	UniRef90	UniRef90_UPI00195B715F	NA	NA
UHGV-0168968_50	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0168968_50	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0168968_50	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA