UHGV-0168998

Genome information

Genome length 16,459 bps

CDS count 22

Completeness 84.40% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0168998
vOTU ID	vOTU-028407
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_542938
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.29
Jumbo phage	No

Genome content
Genome length	16,459 bps
GC content	36.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	91.37%
Average CDS length	684.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0168998_2	Structural annotation	PF17548	NA	NA
UHGV-0168998_4	Structural annotation	PF07865	NA	NA
UHGV-0168998_6	Structural annotation	PF17548	NA	NA
UHGV-0168998_7	Structural annotation	PF17427	NA	NA
UHGV-0168998_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0168998_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0168998_9	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0168998_9	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0168998_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0168998_9	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0168998_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0168998_11	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0168998_11	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0168998_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0168998_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0168998_13	PHROG	phrog_7698	endolysin	lysis
UHGV-0168998_13	UniRef90	UniRef90_A0A3B9GPW1	Cpl-7 domain-containing protein	NA
UHGV-0168998_13	eggNOG-mapper	592010.GCWU000182_001165	Peptidoglycan-binding domain 1 protein	NA
UHGV-0168998_13	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0168998_13	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0168998_13	Structural annotation	PF08230	NA	NA
UHGV-0168998_14	PHROG	phrog_11037	NA	unknown function
UHGV-0168998_14	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0168998_14	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0168998_14	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0168998_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0168998_14	COG	COG3942	Surface antigen	NA
UHGV-0168998_14	Structural annotation	PF18013	NA	NA
UHGV-0168998_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0168998_17	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0168998_17	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0168998_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0168998_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0168998_18	PHROG	phrog_2248	tail protein	tail
UHGV-0168998_18	UniRef90	UniRef90_A0A843HN65	Caud_tail_N domain-containing protein	NA
UHGV-0168998_18	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0168998_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0168998_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0168998_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0168998_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-0168998_19	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0168998_19	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0168998_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0168998_19	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0168998_20	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0168998_20	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-0168998_20	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0168998_21	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0168998_21	PHROG	phrog_18522	tail protein	tail
UHGV-0168998_21	eggNOG-mapper	1449347.JQLN01000004_gene7028	Pectate lyase superfamily protein	NA
UHGV-0168998_21	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0168998_21	Structural annotation	PF12708, PF14606, NF007819, TIGR03808, COG5434	NA	NA
UHGV-0168998_22	UniRef90	UniRef90_A0A7X8K0Q1	EamA family transporter (Fragment)	NA
UHGV-0168998_22	eggNOG-mapper	1232446.BAIE02000048_gene170	PFAM EamA-like transporter family	NA
UHGV-0168998_22	COG	COG0697	Permease of the drug/metabolite transporter (DMT) superfamily	NA