UHGV-0169000

Genome information

Genome length 44,169 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169000
vOTU ID	vOTU-009157
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_542935
BioSample	SAMN06328418
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.58
Jumbo phage	No

Genome content
Genome length	44,169 bps
GC content	40.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.85%
Average CDS length	705.95 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169000_1	KOfam	K09691	wzt, rbfB; lipopolysaccharide transport system ATP-binding protein	NA
UHGV-0169000_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0169000_1	UniRef90	UniRef90_A0A2N0UQV4	Teichoic acids export ATP-binding protein TagH	NA
UHGV-0169000_1	eggNOG-mapper	1160721.RBI_I00539	NA	NA
UHGV-0169000_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0169000_1	COG	COG1134	ABC-type polysaccharide/polyol phosphate transport system, ATPase component	NA
UHGV-0169000_2	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-0169000_2	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0169000_2	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-0169000_2	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-0169000_2	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0169000_2	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0169000_2	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA
UHGV-0169000_3	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-0169000_3	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-0169000_3	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-0169000_3	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0169000_3	Pfam	PF04991	LicD family	LicD
UHGV-0169000_3	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-0169000_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0169000_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0169000_4	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-0169000_4	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-0169000_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0169000_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0169000_4	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0169000_5	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0169000_5	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0169000_5	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0169000_5	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0169000_5	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0169000_5	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0169000_5	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0169000_5	COG	COG0338	DNA-adenine methylase	NA
UHGV-0169000_5	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0169000_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0169000_6	PHROG	phrog_435	endolysin	lysis
UHGV-0169000_6	UniRef90	UniRef90_A0A413QH71	MurNAc-LAA domain-containing protein	NA
UHGV-0169000_6	eggNOG-mapper	1384066.JAGT01000001_gene130	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0169000_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0169000_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0169000_7	PHROG	phrog_881	holin	lysis
UHGV-0169000_7	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0169000_7	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0169000_7	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0169000_7	Structural annotation	PF16938	NA	NA
UHGV-0169000_8	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0169000_8	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0169000_10	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0169000_10	Structural annotation	PF01664	NA	NA
UHGV-0169000_11	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0169000_12	PHROG	phrog_1194	NA	unknown function
UHGV-0169000_12	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0169000_12	Pfam	PF20458	NA	DUF6711
UHGV-0169000_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0169000_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0169000_13	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0169000_13	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0169000_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0169000_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0169000_15	PHROG	phrog_706	NA	unknown function
UHGV-0169000_15	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0169000_15	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0169000_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0169000_15	Structural annotation	PF06854	NA	NA
UHGV-0169000_16	PHROG	phrog_11299	NA	unknown function
UHGV-0169000_16	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0169000_16	Structural annotation	PF10666	NA	NA
UHGV-0169000_17	PHROG	phrog_3099	NA	unknown function
UHGV-0169000_17	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0169000_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169000_18	PHROG	phrog_3266	tail completion	connector
UHGV-0169000_18	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0169000_18	Structural annotation	PF20765	NA	NA
UHGV-0169000_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0169000_19	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0169000_19	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0169000_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0169000_19	Structural annotation	PF11114	NA	NA
UHGV-0169000_20	PHROG	phrog_3366	NA	unknown function
UHGV-0169000_20	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0169000_20	Pfam	PF20536	NA	DUF6751
UHGV-0169000_20	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0169000_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0169000_21	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0169000_21	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0169000_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0169000_22	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0169000_22	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0169000_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0169000_23	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0169000_23	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0169000_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0169000_23	Structural annotation	PF06810	NA	NA
UHGV-0169000_24	PHROG	phrog_2616	NA	unknown function
UHGV-0169000_24	Structural annotation	PF01281	NA	NA
UHGV-0169000_25	PHROG	phrog_20195	NA	unknown function
UHGV-0169000_26	UniRef90	UniRef90_R6WQ42	Conserved domain protein	NA
UHGV-0169000_26	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-0169000_26	COG	COG2369	NA	NA
UHGV-0169000_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0169000_27	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0169000_27	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0169000_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0169000_27	COG	COG2369	NA	NA
UHGV-0169000_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0169000_28	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0169000_28	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0169000_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0169000_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169000_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0169000_29	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0169000_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0169000_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169000_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0169000_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169000_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169000_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169000_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169000_30	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0169000_30	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0169000_30	Pfam	PF07374	NA	DUF1492
UHGV-0169000_30	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0169000_33	PHROG	phrog_5051	NA	unknown function
UHGV-0169000_33	eggNOG-mapper	257314.LJ_1445	NA	NA
UHGV-0169000_35	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0169000_37	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0169000_37	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0169000_37	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0169000_37	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0169000_37	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0169000_37	Pfam	PF19263	NA	DUF5906
UHGV-0169000_37	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0169000_37	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0169000_37	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0169000_37	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0169000_38	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169000_38	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0169000_38	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0169000_38	Pfam	PF05037	NA	DUF669
UHGV-0169000_38	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0169000_39	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169000_39	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0169000_39	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0169000_39	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0169000_39	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0169000_40	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0169000_40	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169000_40	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0169000_40	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0169000_40	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0169000_40	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0169000_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0169000_40	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0169000_40	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0169000_41	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169000_41	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0169000_41	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0169000_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0169000_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0169000_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0169000_42	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0169000_42	eggNOG-mapper	1027396.LMOSA_21290	Siphovirus Gp157	NA
UHGV-0169000_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0169000_42	Structural annotation	PF05565	NA	NA
UHGV-0169000_43	PHROG	phrog_15609	NA	unknown function
UHGV-0169000_43	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0169000_43	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0169000_44	PHROG	phrog_8470	NA	unknown function
UHGV-0169000_44	UniRef90	UniRef90_A0A8F2VP41	PcfJ domain-containing protein	NA
UHGV-0169000_44	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0169000_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0169000_48	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0169000_50	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169000_50	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-0169000_50	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0169000_50	Structural annotation	COG2250	NA	NA
UHGV-0169000_51	PHROG	phrog_3882	NA	unknown function
UHGV-0169000_52	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0169000_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169000_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0169000_53	UniRef90	UniRef90_A0A413K864	XRE family transcriptional regulator	NA
UHGV-0169000_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0169000_53	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0169000_54	PHROG	phrog_87	metallo-protease	other
UHGV-0169000_54	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0169000_54	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0169000_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0169000_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0169000_55	PHROG	phrog_3243	NA	unknown function
UHGV-0169000_55	eggNOG-mapper	1121904.ARBP01000046_gene1866	NA	NA
UHGV-0169000_55	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0169000_56	KOfam	K14059	int; integrase	NA
UHGV-0169000_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0169000_56	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0169000_56	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0169000_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169000_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0169000_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0169000_57	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0169000_57	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0169000_57	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0169000_57	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0169000_57	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0169000_57	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0169000_57	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0169000_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0169000_57	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA