UHGV-0169076

Genome information

Genome length 37,496 bps

CDS count 59

Completeness 88.16% (medium-quality)

geNomad score 0.9632

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169076
vOTU ID	vOTU-023591
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_554380
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9632
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.5
Jumbo phage	No

Genome content
Genome length	37,496 bps
GC content	47.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.23%
Average CDS length	584.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169076_1	KOfam	K14059	int; integrase	NA
UHGV-0169076_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0169076_1	UniRef90	UniRef90_UPI00135AE8DA	tyrosine-type recombinase/integrase	NA
UHGV-0169076_1	eggNOG-mapper	1111454.HMPREF1250_0778	Belongs to the 'phage' integrase family	NA
UHGV-0169076_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169076_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0169076_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0169076_2	UniRef90	UniRef90_A0A1E3C1R9	Cell filamentation protein Fic	NA
UHGV-0169076_2	eggNOG-mapper	59374.Fisuc_1288	NA	NA
UHGV-0169076_2	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0169076_2	COG	COG3943	NA	NA
UHGV-0169076_2	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0169076_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0169076_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0169076_3	UniRef90	UniRef90_A0A6N7W245	Helix-turn-helix domain-containing protein	NA
UHGV-0169076_3	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-0169076_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169076_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0169076_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169076_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0169076_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0169076_4	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0169076_4	UniRef90	UniRef90_A0A6N7VZD4	Helix-turn-helix transcriptional regulator	NA
UHGV-0169076_4	eggNOG-mapper	272560.BPSL0549A	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0169076_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169076_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0169076_8	PHROG	phrog_6058	NA	unknown function
UHGV-0169076_8	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0169076_8	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0169076_9	UniRef90	UniRef90_UPI001D016E13	LysM domain-containing protein	NA
UHGV-0169076_9	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-0169076_9	Pfam	PF01476	LysM domain	LysM
UHGV-0169076_9	COG	COG1388	LysM repeat	NA
UHGV-0169076_9	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0169076_11	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0169076_11	UniRef90	UniRef90_UPI0008D9397B	host-nuclease inhibitor Gam family protein	NA
UHGV-0169076_11	eggNOG-mapper	1031288.AXAA01000044_gene1974	Bacteriophage Mu Gam like protein	NA
UHGV-0169076_11	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0169076_11	Structural annotation	PF07352	NA	NA
UHGV-0169076_12	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169076_12	UniRef90	UniRef90_UPI000D0EBA7D	ERF family protein	NA
UHGV-0169076_12	eggNOG-mapper	1220551.SCHR_00780	ERF superfamily	NA
UHGV-0169076_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0169076_12	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0169076_13	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169076_13	UniRef90	UniRef90_G4Q8P3	DnaB_2 domain-containing protein	NA
UHGV-0169076_13	eggNOG-mapper	568816.Acin_1251	DnaD domain protein	NA
UHGV-0169076_13	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0169076_13	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0169076_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0169076_14	PHROG	phrog_9804	NA	unknown function
UHGV-0169076_14	eggNOG-mapper	568816.Acin_1250	NA	NA
UHGV-0169076_14	Structural annotation	PF11417	NA	NA
UHGV-0169076_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0169076_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169076_15	UniRef90	UniRef90_A0A3A5RJ46	Single-stranded DNA-binding protein	NA
UHGV-0169076_15	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0169076_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0169076_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0169076_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0169076_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0169076_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0169076_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0169076_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169076_17	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0169076_17	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0169076_17	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0169076_18	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0169076_18	UniRef90	UniRef90_A0A073IPN1	Methyltransferase	NA
UHGV-0169076_18	eggNOG-mapper	2754.EH55_06965	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0169076_18	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0169076_18	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0169076_18	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0169076_19	PHROG	phrog_6151	DNA methyltransferase	other
UHGV-0169076_19	UniRef90	UniRef90_A0A1L3NHA2	Putative dNA cytosine methyltransferase	NA
UHGV-0169076_19	eggNOG-mapper	864563.HMPREF9166_0581	methyltransferase	NA
UHGV-0169076_19	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0169076_19	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0169076_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169076_23	eggNOG-mapper	568816.Acin_1244	NA	NA
UHGV-0169076_23	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-0169076_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0169076_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0169076_24	UniRef90	UniRef90_A0A1G5VI43	Phage terminase small subunit	NA
UHGV-0169076_24	eggNOG-mapper	526218.Sterm_1425	terminase small subunit	NA
UHGV-0169076_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0169076_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0169076_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0169076_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169076_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0169076_25	UniRef90	UniRef90_G4Q9A6	Phage terminase large subunit	NA
UHGV-0169076_25	eggNOG-mapper	568816.Acin_1386	Phage terminase, large subunit	NA
UHGV-0169076_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169076_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0169076_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169076_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169076_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169076_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0169076_26	UniRef90	UniRef90_G4Q9A5	SPP1 family phage portal protein	NA
UHGV-0169076_26	eggNOG-mapper	568816.Acin_1385	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0169076_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169076_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0169076_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0169076_27	PHROG	phrog_29127	NA	unknown function
UHGV-0169076_27	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0169076_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0169076_28	UniRef90	UniRef90_G4Q9A3	Phage minor structural protein GP20	NA
UHGV-0169076_28	eggNOG-mapper	568816.Acin_1383	Phage minor structural protein GP20	NA
UHGV-0169076_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0169076_28	Structural annotation	PF06810	NA	NA
UHGV-0169076_29	PHROG	phrog_247	major head protein	head and packaging
UHGV-0169076_29	UniRef90	UniRef90_G4Q9A2	Coat protein	NA
UHGV-0169076_29	eggNOG-mapper	568816.Acin_1382	NA	NA
UHGV-0169076_29	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0169076_29	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0169076_30	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0169076_30	UniRef90	UniRef90_G4Q9A1	Putative head protein	NA
UHGV-0169076_30	eggNOG-mapper	568816.Acin_1381	Phage Mu protein F like protein	NA
UHGV-0169076_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0169076_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0169076_30	COG	COG2369	NA	NA
UHGV-0169076_30	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0169076_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0169076_32	eggNOG-mapper	1273103.NM10_01059	NA	NA
UHGV-0169076_33	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0169076_33	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0169076_33	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0169076_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0169076_34	UniRef90	UniRef90_UPI0005EBC23C	HK97 gp10 family phage protein	NA
UHGV-0169076_34	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0169076_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0169076_34	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0169076_35	PHROG	phrog_525	NA	unknown function
UHGV-0169076_35	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0169076_35	Pfam	PF20765	NA	DUF6838
UHGV-0169076_35	Structural annotation	PF20765	NA	NA
UHGV-0169076_36	PHROG	phrog_1480	tail sheath	tail
UHGV-0169076_36	UniRef90	UniRef90_G4Q998	Phage_sheath_1C domain-containing protein	NA
UHGV-0169076_36	eggNOG-mapper	568816.Acin_1378	Phage tail sheath C-terminal domain	NA
UHGV-0169076_36	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0169076_36	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0169076_36	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0169076_37	PHROG	phrog_365	tail protein	tail
UHGV-0169076_37	UniRef90	UniRef90_U7UKD6	PF09393 family protein	NA
UHGV-0169076_37	eggNOG-mapper	568816.Acin_1377	Phage tail tube protein	NA
UHGV-0169076_37	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0169076_37	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0169076_38	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0169076_38	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0169076_38	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0169076_38	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0169076_38	Structural annotation	PF08890	NA	NA
UHGV-0169076_39	PHROG	phrog_16692	NA	unknown function
UHGV-0169076_39	UniRef90	UniRef90_G4Q995	Phage tail tape measure protein, TP901 family, core region domain protein	NA
UHGV-0169076_39	eggNOG-mapper	568816.Acin_1375	Phage-related minor tail protein	NA
UHGV-0169076_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0169076_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0169076_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0169076_39	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0169076_40	PHROG	phrog_380	endolysin	lysis
UHGV-0169076_40	UniRef90	UniRef90_A0A0C1UAF4	LysM domain protein	NA
UHGV-0169076_40	eggNOG-mapper	568816.Acin_1374	LysM domain	NA
UHGV-0169076_40	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0169076_40	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0169076_41	PHROG	phrog_400	tail protein	tail
UHGV-0169076_41	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0169076_41	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0169076_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0169076_41	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0169076_42	PHROG	phrog_579	NA	unknown function
UHGV-0169076_42	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-0169076_42	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-0169076_42	Pfam	PF10844	NA	DUF2577
UHGV-0169076_42	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0169076_43	PHROG	phrog_120	baseplate protein	tail
UHGV-0169076_43	UniRef90	UniRef90_G4Q991	NA	NA
UHGV-0169076_43	eggNOG-mapper	568816.Acin_1371	NA	NA
UHGV-0169076_43	Pfam	PF10934	NA	DUF2634
UHGV-0169076_43	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0169076_44	PHROG	phrog_6	baseplate protein	tail
UHGV-0169076_44	UniRef90	UniRef90_G4Q990	Baseplate_J domain-containing protein	NA
UHGV-0169076_44	eggNOG-mapper	568816.Acin_1370	Baseplate J-like protein	NA
UHGV-0169076_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0169076_44	COG	COG3299	NA	NA
UHGV-0169076_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0169076_45	PHROG	phrog_521	tail protein	tail
UHGV-0169076_45	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-0169076_45	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0169076_45	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0169076_45	COG	COG3778	NA	NA
UHGV-0169076_45	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0169076_46	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0169076_46	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-0169076_46	eggNOG-mapper	1401067.HMPREF0872_00205	tail collar domain protein	NA
UHGV-0169076_46	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0169076_46	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0169076_46	Structural annotation	PF12571	NA	NA
UHGV-0169076_48	KOfam	K14059	int; integrase	NA
UHGV-0169076_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0169076_48	UniRef90	UniRef90_A0A1M6NZU6	Site-specific recombinase XerD	NA
UHGV-0169076_48	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0169076_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169076_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0169076_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0169076_49	PHROG	phrog_32639	NA	unknown function
UHGV-0169076_49	Structural annotation	PF21611	NA	NA
UHGV-0169076_51	PHROG	phrog_199	holin	lysis
UHGV-0169076_51	UniRef90	UniRef90_UPI001D055399	phage holin family protein	NA
UHGV-0169076_51	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0169076_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0169076_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0169076_52	PHROG	phrog_5867	endolysin	lysis
UHGV-0169076_52	UniRef90	UniRef90_UPI001B7FBF6A	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0169076_52	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0169076_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0169076_52	Structural annotation	MF_04111	NA	NA
UHGV-0169076_53	PHROG	phrog_37316	NA	unknown function
UHGV-0169076_53	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0169076_54	eggNOG-mapper	568816.Acin_1239	NA	NA
UHGV-0169076_55	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0169076_55	eggNOG-mapper	568816.Acin_0423	NA	NA
UHGV-0169076_58	eggNOG-mapper	272563.CD630_09460	Phage Mu protein F like protein	NA
UHGV-0169076_58	COG	COG2369	NA	NA