UHGV-0169089

Genome information

Genome length 55,837 bps

CDS count 94

Completeness 94.67% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169089
vOTU ID	vOTU-079748
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_549173
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.46
Jumbo phage	No

Genome content
Genome length	55,837 bps
GC content	38.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	88.39%
Average CDS length	527.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169089_1	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169089_1	UniRef90	UniRef90_A0A7Z8W9T4	Replication protein	NA
UHGV-0169089_1	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-0169089_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0169089_1	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0169089_2	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0169089_2	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0169089_7	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0169089_7	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0169089_7	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0169089_9	PHROG	phrog_10678	NA	unknown function
UHGV-0169089_11	PHROG	phrog_6058	NA	unknown function
UHGV-0169089_11	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-0169089_11	Structural annotation	NF033787	NA	NA
UHGV-0169089_12	PHROG	phrog_36964	terminase large subunit	head and packaging
UHGV-0169089_12	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0169089_12	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0169089_12	Pfam	PF05204	Homing endonuclease	Hom_end
UHGV-0169089_12	COG	COG5410	NA	NA
UHGV-0169089_12	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0169089_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169089_13	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0169089_13	Structural annotation	PF02996	NA	NA
UHGV-0169089_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0169089_14	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0169089_14	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0169089_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169089_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0169089_15	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0169089_15	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0169089_15	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0169089_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0169089_15	COG	COG2369	NA	NA
UHGV-0169089_15	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0169089_16	Structural annotation	PF14265	NA	NA
UHGV-0169089_17	PHROG	phrog_909	major head protein	head and packaging
UHGV-0169089_17	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0169089_17	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0169089_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0169089_18	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0169089_18	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0169089_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0169089_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0169089_19	Structural annotation	PF21169	NA	NA
UHGV-0169089_20	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0169089_21	PHROG	phrog_4105	NA	unknown function
UHGV-0169089_21	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0169089_22	PHROG	phrog_1129	holin	lysis
UHGV-0169089_22	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0169089_22	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0169089_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0169089_22	Structural annotation	PF06946	NA	NA
UHGV-0169089_23	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0169089_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0169089_24	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0169089_24	AcrCatalog	cluster_24841	NA	NA
UHGV-0169089_25	Structural annotation	PF05657	NA	NA
UHGV-0169089_26	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0169089_26	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0169089_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0169089_29	PHROG	phrog_291	endolysin	lysis
UHGV-0169089_29	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0169089_29	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-0169089_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0169089_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0169089_29	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0169089_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0169089_30	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0169089_30	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0169089_30	COG	COG1511	NA	NA
UHGV-0169089_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0169089_31	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0169089_31	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0169089_31	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0169089_32	PHROG	phrog_1194	NA	unknown function
UHGV-0169089_32	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-0169089_32	Pfam	PF20458	NA	DUF6711
UHGV-0169089_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0169089_33	PHROG	phrog_6616	tail protein	tail
UHGV-0169089_33	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0169089_33	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0169089_33	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0169089_33	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0169089_34	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0169089_36	PHROG	phrog_3845	NA	unknown function
UHGV-0169089_36	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0169089_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0169089_37	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0169089_37	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0169089_37	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0169089_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169089_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169089_37	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0169089_38	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-0169089_38	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0169089_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169089_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169089_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0169089_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0169089_41	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0169089_41	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0169089_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0169089_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0169089_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0169089_41	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0169089_42	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0169089_42	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0169089_45	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0169089_45	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169089_45	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0169089_45	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0169089_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0169089_45	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0169089_49	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0169089_49	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169089_49	UniRef90	UniRef90_A0A6M3JJ85	Putative DNA recombination protein (Fragment)	NA
UHGV-0169089_49	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0169089_49	Pfam	PF03837	RecT family	RecT
UHGV-0169089_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0169089_50	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169089_50	eggNOG-mapper	926561.KB900622_gene662	RecT family	NA
UHGV-0169089_50	Pfam	PF03837	RecT family	RecT
UHGV-0169089_50	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0169089_51	PHROG	phrog_25456	NA	unknown function
UHGV-0169089_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169089_52	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0169089_52	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0169089_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0169089_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169089_52	Structural annotation	COG0175	NA	NA
UHGV-0169089_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169089_53	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0169089_53	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0169089_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0169089_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169089_53	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0169089_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0169089_54	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0169089_54	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0169089_54	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0169089_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0169089_55	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0169089_55	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0169089_55	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0169089_55	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0169089_55	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0169089_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0169089_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169089_57	UniRef90	UniRef90_UPI000E3FC2A8	single-stranded DNA-binding protein	NA
UHGV-0169089_57	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0169089_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0169089_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0169089_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0169089_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0169089_57	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0169089_58	Structural annotation	PF00041	NA	NA
UHGV-0169089_59	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169089_59	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0169089_59	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0169089_60	PHROG	phrog_19106	NA	unknown function
UHGV-0169089_60	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0169089_60	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0169089_60	Structural annotation	TIGR01453	NA	NA
UHGV-0169089_61	UniRef90	UniRef90_A0A1Y4R9D2	Radical SAM protein	NA
UHGV-0169089_61	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0169089_61	COG	COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	NA
UHGV-0169089_61	Structural annotation	PF04055, MF_01225_A, TIGR04303, COG0535	NA	NA
UHGV-0169089_63	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169089_63	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0169089_63	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0169089_63	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0169089_63	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0169089_65	PHROG	phrog_9804	NA	unknown function
UHGV-0169089_65	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0169089_65	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0169089_65	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0169089_65	Structural annotation	PF11417	NA	NA
UHGV-0169089_66	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0169089_71	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0169089_72	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169089_72	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0169089_72	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0169089_72	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0169089_72	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0169089_72	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0169089_73	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0169089_75	PHROG	phrog_10714	NA	unknown function
UHGV-0169089_75	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0169089_77	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0169089_77	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0169089_77	UniRef90	UniRef90_UPI000462F5E4	site-specific DNA-methyltransferase	NA
UHGV-0169089_77	eggNOG-mapper	1345695.CLSA_c30050	DNA methylase	NA
UHGV-0169089_77	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0169089_77	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0169089_77	COG	COG0863	DNA modification methylase	NA
UHGV-0169089_77	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0169089_78	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0169089_79	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0169089_79	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0169089_79	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0169089_79	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0169089_79	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0169089_79	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0169089_80	KOfam	K14059	int; integrase	NA
UHGV-0169089_80	PHROG	phrog_1	integrase	integration and excision
UHGV-0169089_80	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0169089_80	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0169089_80	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0169089_80	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0169089_80	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169089_80	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0169089_80	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0169089_82	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0169089_82	Structural annotation	NF033819	NA	NA
UHGV-0169089_84	PHROG	phrog_16490	NA	unknown function
UHGV-0169089_84	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0169089_85	PHROG	phrog_20016	NA	unknown function
UHGV-0169089_85	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0169089_85	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0169089_85	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0169089_86	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0169089_87	PHROG	phrog_1233	NA	unknown function
UHGV-0169089_87	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0169089_91	Structural annotation	PF13973	NA	NA
UHGV-0169089_94	eggNOG-mapper	502558.EGYY_02830	NA	NA