UHGV-0169140

Genome information

Genome length 31,633 bps

CDS count 55

Completeness 82.30% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169140
vOTU ID	vOTU-016049
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_540447
BioSample	SAMN06328439
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.33
Jumbo phage	No

Genome content
Genome length	31,633 bps
GC content	48.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.16%
Average CDS length	540.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169140_1	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0169140_1	PHROG	phrog_8036	NA	unknown function
UHGV-0169140_1	UniRef90	UniRef90_R5A7E7	Bro-N domain-containing protein	NA
UHGV-0169140_1	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-0169140_1	AcrCatalog	cluster_17589	NA	NA
UHGV-0169140_1	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0169140_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0169140_1	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0169140_1	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0169140_2	PHROG	phrog_20886	NA	unknown function
UHGV-0169140_2	UniRef90	UniRef90_UPI0007E1B082	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0169140_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0169140_3	UniRef90	UniRef90_R5ADP7	HTH cro/C1-type domain-containing protein	NA
UHGV-0169140_3	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0169140_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0169140_3	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0169140_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0169140_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0169140_4	UniRef90	UniRef90_R5A8W1	HTH cro/C1-type domain-containing protein	NA
UHGV-0169140_4	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0169140_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169140_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169140_4	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0169140_6	PHROG	phrog_585	NA	unknown function
UHGV-0169140_6	UniRef90	UniRef90_UPI000F79CF5C	NA	NA
UHGV-0169140_6	eggNOG-mapper	411460.RUMTOR_02060	NA	NA
UHGV-0169140_6	Pfam	PF10711	NA	DUF2513
UHGV-0169140_9	UniRef90	UniRef90_R5A8W4	HTH cro/C1-type domain-containing protein	NA
UHGV-0169140_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0169140_13	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169140_13	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0169140_13	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0169140_13	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0169140_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0169140_14	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0169140_14	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0169140_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0169140_15	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169140_15	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0169140_16	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169140_16	UniRef90	UniRef90_A0A350TWM2	NA	NA
UHGV-0169140_16	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0169140_16	Pfam	PF19808	NA	DUF6291
UHGV-0169140_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0169140_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0169140_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169140_17	UniRef90	UniRef90_A0A396NX04	IstB_IS21 domain-containing protein	NA
UHGV-0169140_17	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0169140_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0169140_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0169140_17	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0169140_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0169140_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169140_18	UniRef90	UniRef90_R5ADK0	Single-stranded DNA-binding protein	NA
UHGV-0169140_18	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0169140_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0169140_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0169140_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0169140_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0169140_18	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0169140_19	PHROG	phrog_10714	NA	unknown function
UHGV-0169140_19	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0169140_19	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0169140_20	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0169140_21	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0169140_22	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-0169140_23	Structural annotation	NF007260	NA	NA
UHGV-0169140_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0169140_24	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0169140_24	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0169140_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169140_25	UniRef90	UniRef90_A0A396PTA3	NA	NA
UHGV-0169140_25	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0169140_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0169140_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0169140_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0169140_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0169140_26	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0169140_26	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0169140_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0169140_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0169140_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0169140_26	COG	COG0863	DNA modification methylase	NA
UHGV-0169140_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0169140_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169140_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0169140_29	UniRef90	UniRef90_R5AG08	Phage terminase	NA
UHGV-0169140_29	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0169140_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169140_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0169140_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169140_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169140_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169140_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0169140_30	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-0169140_30	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0169140_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169140_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0169140_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0169140_31	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-0169140_31	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0169140_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0169140_31	COG	COG2369	NA	NA
UHGV-0169140_31	Structural annotation	PF06152	NA	NA
UHGV-0169140_32	Structural annotation	PF11344	NA	NA
UHGV-0169140_33	PHROG	phrog_15041	NA	unknown function
UHGV-0169140_33	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0169140_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0169140_35	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0169140_35	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0169140_35	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0169140_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0169140_37	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0169140_38	PHROG	phrog_3366	NA	unknown function
UHGV-0169140_38	Pfam	PF20536	NA	DUF6751
UHGV-0169140_38	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0169140_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0169140_39	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0169140_39	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-0169140_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0169140_39	Structural annotation	PF11114	NA	NA
UHGV-0169140_40	PHROG	phrog_3266	tail completion	connector
UHGV-0169140_40	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-0169140_40	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0169140_40	Structural annotation	PF12691	NA	NA
UHGV-0169140_41	PHROG	phrog_3099	NA	unknown function
UHGV-0169140_41	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0169140_41	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0169140_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169140_42	Structural annotation	PF20378	NA	NA
UHGV-0169140_43	PHROG	phrog_706	NA	unknown function
UHGV-0169140_43	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-0169140_43	eggNOG-mapper	642492.Clole_0828	Bacteriophage Gp15 protein	NA
UHGV-0169140_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0169140_43	Structural annotation	PF06854	NA	NA
UHGV-0169140_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0169140_44	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0169140_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0169140_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0169140_45	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0169140_45	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-0169140_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0169140_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0169140_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0169140_46	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0169140_46	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-0169140_46	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0169140_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0169140_46	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0169140_46	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0169140_46	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-0169140_48	PHROG	phrog_2310	NA	unknown function
UHGV-0169140_48	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-0169140_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0169140_49	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0169140_49	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0169140_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0169140_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0169140_49	COG	COG4926	Phage-related protein	NA
UHGV-0169140_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0169140_50	PHROG	phrog_937	hemolysin	other
UHGV-0169140_50	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0169140_52	PHROG	phrog_36029	NA	unknown function
UHGV-0169140_52	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0169140_52	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0169140_53	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0169140_53	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0169140_53	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0169140_53	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0169140_53	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0169140_54	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0169140_54	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0169140_54	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0169140_54	Pfam	PF14359	NA	DUF4406
UHGV-0169140_54	Structural annotation	PF14359	NA	NA