UHGV-0169220

Genome information

Genome length 25,086 bps

CDS count 34

Completeness 59.04% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169220
vOTU ID	vOTU-022382
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_518718
BioSample	SAMN06164880
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.22
Jumbo phage	No

Genome content
Genome length	25,086 bps
GC content	50.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	95.83%
Average CDS length	711.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169220_1	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0169220_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0169220_2	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0169220_2	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169220_2	UniRef90	UniRef90_A0A1C5PHR3	DNA methylase	NA
UHGV-0169220_2	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0169220_2	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0169220_2	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0169220_2	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0169220_2	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0169220_2	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0169220_5	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0169220_5	PHROG	phrog_200	lipoprotein	other
UHGV-0169220_5	UniRef90	UniRef90_A0A8G1THJ2	Prohibitin family protein	NA
UHGV-0169220_5	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-0169220_5	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0169220_5	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0169220_5	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0169220_6	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0169220_9	PHROG	phrog_11237	NA	unknown function
UHGV-0169220_9	Structural annotation	TIGR01636	NA	NA
UHGV-0169220_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0169220_10	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0169220_10	UniRef90	UniRef90_A0A6N3C4U5	Terminase small subunit	NA
UHGV-0169220_10	eggNOG-mapper	1071073.KI530547_gene3806	Terminase small subunit	NA
UHGV-0169220_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0169220_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0169220_10	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0169220_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169220_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0169220_11	UniRef90	UniRef90_A0A2K9NYT9	Terminase large subunit	NA
UHGV-0169220_11	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0169220_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169220_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0169220_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169220_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169220_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-0169220_12	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0169220_12	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0169220_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169220_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0169220_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0169220_13	UniRef90	UniRef90_UPI0004B3060C	phage minor capsid protein	NA
UHGV-0169220_13	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0169220_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0169220_13	COG	COG2369	NA	NA
UHGV-0169220_13	Structural annotation	PF06152	NA	NA
UHGV-0169220_14	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0169220_14	eggNOG-mapper	1064535.MELS_1696	NA	NA
UHGV-0169220_14	Structural annotation	PF20111	NA	NA
UHGV-0169220_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0169220_15	UniRef90	UniRef90_UPI000C762A87	phage scaffolding protein	NA
UHGV-0169220_15	eggNOG-mapper	642492.Clole_0820	PFAM Phage minor structural	NA
UHGV-0169220_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0169220_15	Structural annotation	PF06810	NA	NA
UHGV-0169220_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0169220_16	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0169220_16	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0169220_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0169220_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0169220_17	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0169220_18	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0169220_18	Pfam	PF20536	NA	DUF6751
UHGV-0169220_18	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0169220_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0169220_19	UniRef90	UniRef90_UPI001C640A0C	minor capsid protein	NA
UHGV-0169220_19	eggNOG-mapper	663278.Ethha_0493	Minor capsid protein	NA
UHGV-0169220_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0169220_19	Structural annotation	PF11114	NA	NA
UHGV-0169220_20	PHROG	phrog_3266	tail completion	connector
UHGV-0169220_20	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0169220_20	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0169220_20	Structural annotation	PF12691	NA	NA
UHGV-0169220_21	PHROG	phrog_3099	NA	unknown function
UHGV-0169220_21	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0169220_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169220_23	PHROG	phrog_706	NA	unknown function
UHGV-0169220_23	UniRef90	UniRef90_UPI000CF9A546	Gp15 family bacteriophage protein	NA
UHGV-0169220_23	eggNOG-mapper	642492.Clole_0828	Bacteriophage Gp15 protein	NA
UHGV-0169220_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0169220_23	Structural annotation	PF06854	NA	NA
UHGV-0169220_25	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0169220_25	UniRef90	UniRef90_UPI00067EBDC6	phage tail tape measure protein	NA
UHGV-0169220_25	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0169220_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0169220_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0169220_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0169220_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0169220_26	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0169220_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0169220_27	UniRef90	UniRef90_UPI001B187926	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0169220_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0169220_27	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0169220_30	PHROG	phrog_9915	NA	unknown function
UHGV-0169220_30	Pfam	PF03382	NA	DUF285
UHGV-0169220_30	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0169220_30	Structural annotation	PF03382	NA	NA
UHGV-0169220_32	PHROG	phrog_937	hemolysin	other
UHGV-0169220_33	PHROG	phrog_263	holin	lysis
UHGV-0169220_33	UniRef90	UniRef90_A0A2K9P5F7	Phage holin	NA
UHGV-0169220_33	eggNOG-mapper	1297617.JPJD01000099_gene2175	SPP1 phage holin	NA
UHGV-0169220_33	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0169220_33	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0169220_33	Structural annotation	PF04688	NA	NA
UHGV-0169220_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0169220_34	PHROG	phrog_435	endolysin	lysis
UHGV-0169220_34	eggNOG-mapper	479437.Elen_2053	amidase activity	NA
UHGV-0169220_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0169220_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA