UHGV-0169259

Genome information

Genome length 35,181 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169259
vOTU ID	vOTU-046389
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_526029
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.29
Jumbo phage	No

Genome content
Genome length	35,181 bps
GC content	44.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.80%
Average CDS length	668.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169259_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0169259_1	UniRef90	UniRef90_R6TCY9	Transcriptional regulator	NA
UHGV-0169259_1	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0169259_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0169259_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0169259_2	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-0169259_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0169259_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169259_2	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0169259_5	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0169259_6	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0169259_6	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0169259_11	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169259_11	UniRef90	UniRef90_A0A373XZR2	ATP-binding protein	NA
UHGV-0169259_11	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0169259_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0169259_12	PHROG	phrog_18107	NA	unknown function
UHGV-0169259_12	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0169259_12	Structural annotation	PF05037	NA	NA
UHGV-0169259_13	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0169259_13	UniRef90	UniRef90_R6T0H0	ERCC4 domain-containing protein	NA
UHGV-0169259_13	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0169259_13	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0169259_13	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0169259_13	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0169259_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169259_14	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0169259_14	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0169259_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0169259_14	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0169259_15	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0169259_15	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0169259_15	UniRef90	UniRef90_R6SWZ2	SF4 helicase domain-containing protein	NA
UHGV-0169259_15	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0169259_15	Pfam	PF13481	AAA domain	AAA_25
UHGV-0169259_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0169259_15	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0169259_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169259_18	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0169259_18	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0169259_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169259_18	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0169259_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0169259_19	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0169259_19	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0169259_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0169259_19	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0169259_21	PHROG	phrog_22543	NA	unknown function
UHGV-0169259_22	PHROG	phrog_8684	NA	unknown function
UHGV-0169259_22	UniRef90	UniRef90_UPI00189B8BA4	YopX family protein	NA
UHGV-0169259_22	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0169259_22	Pfam	PF09643	YopX protein	YopX
UHGV-0169259_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0169259_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169259_24	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-0169259_24	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-0169259_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0169259_24	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0169259_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169259_25	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0169259_25	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0169259_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0169259_26	PHROG	phrog_1066	NA	unknown function
UHGV-0169259_26	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0169259_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0169259_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0169259_27	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0169259_27	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0169259_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0169259_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0169259_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0169259_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0169259_28	PHROG	phrog_21498	NA	unknown function
UHGV-0169259_28	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0169259_28	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0169259_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0169259_28	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0169259_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0169259_29	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0169259_29	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0169259_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0169259_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0169259_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0169259_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0169259_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0169259_30	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0169259_30	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0169259_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0169259_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0169259_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0169259_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0169259_31	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0169259_31	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0169259_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0169259_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0169259_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0169259_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0169259_32	PHROG	phrog_5223	neck protein	connector
UHGV-0169259_32	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0169259_32	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0169259_32	Structural annotation	TIGR01560	NA	NA
UHGV-0169259_33	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0169259_33	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0169259_33	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0169259_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0169259_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0169259_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0169259_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0169259_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0169259_34	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0169259_34	eggNOG-mapper	904144.AEJD01000006_gene564	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0169259_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0169259_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0169259_35	Structural annotation	PF20765	NA	NA
UHGV-0169259_36	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0169259_36	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0169259_36	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0169259_36	eggNOG-mapper	1458861.A0A088C517_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0169259_36	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0169259_36	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0169259_37	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0169259_37	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0169259_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0169259_38	Structural annotation	PF17388	NA	NA
UHGV-0169259_39	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0169259_40	PHROG	phrog_23464	NA	unknown function
UHGV-0169259_40	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0169259_40	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-0169259_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0169259_40	Structural annotation	COG5280	NA	NA
UHGV-0169259_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0169259_41	eggNOG-mapper	1487921.DP68_11370	tail component	NA
UHGV-0169259_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0169259_41	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0169259_42	PHROG	phrog_3558	tail protein	tail
UHGV-0169259_42	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0169259_42	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0169259_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0169259_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0169259_42	COG	COG4926	Phage-related protein	NA
UHGV-0169259_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0169259_43	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0169259_44	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0169259_44	Structural annotation	PF10651	NA	NA
UHGV-0169259_46	PHROG	phrog_134	NA	unknown function
UHGV-0169259_46	UniRef90	UniRef90_UPI00189C704B	XkdX family protein	NA
UHGV-0169259_46	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0169259_46	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0169259_46	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0169259_46	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0169259_47	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-0169259_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0169259_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0169259_48	PHROG	phrog_8781	endolysin	lysis
UHGV-0169259_48	UniRef90	UniRef90_A0A374HXC4	CHAP domain-containing protein	NA
UHGV-0169259_48	eggNOG-mapper	1405498.SSIM_04755	Ami_2	NA
UHGV-0169259_48	Pfam	PF05257	CHAP domain	CHAP
UHGV-0169259_48	COG	COG1388	LysM repeat	NA
UHGV-0169259_48	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0169259_49	UniRef90	UniRef90_A0A373LH84	Fibronectin type-III domain-containing protein	NA
UHGV-0169259_49	eggNOG-mapper	1160721.RBI_II00464	self proteolysis	NA
UHGV-0169259_49	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0169259_49	COG	COG3209	NA	NA