UHGV-0169299

Genome information

Genome length 42,957 bps

CDS count 58

Completeness 92.16% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169299
vOTU ID	vOTU-072548
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552429
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.62
Jumbo phage	No

Genome content
Genome length	42,957 bps
GC content	41.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.08%
Average CDS length	684.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169299_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0169299_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0169299_1	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0169299_1	eggNOG-mapper	411470.RUMGNA_03227	Resolvase, N terminal domain	NA
UHGV-0169299_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0169299_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0169299_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0169299_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0169299_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0169299_2	PHROG	phrog_29304	NA	unknown function
UHGV-0169299_2	UniRef90	UniRef90_UPI0010631ACC	type II toxin-antitoxin system MqsA family antitoxin	NA
UHGV-0169299_2	eggNOG-mapper	658086.HMPREF0994_03191	NA	NA
UHGV-0169299_2	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0169299_2	Structural annotation	PF14122, TIGR03829	NA	NA
UHGV-0169299_3	PHROG	phrog_38135	NA	unknown function
UHGV-0169299_3	UniRef90	UniRef90_A0A1C5X461	Transcription initiation factor TFIID, subunit TAF12 (Also component of histone acetyltransferase SAGA)	NA
UHGV-0169299_3	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0169299_3	Pfam	PF14020	NA	DUF4236
UHGV-0169299_3	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0169299_3	Structural annotation	PF14020	NA	NA
UHGV-0169299_4	PHROG	phrog_87	metallo-protease	other
UHGV-0169299_4	UniRef90	UniRef90_A0A3E3JY97	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0169299_4	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-0169299_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0169299_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0169299_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0169299_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0169299_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0169299_5	UniRef90	UniRef90_A0A2N5PI64	Transcriptional regulator	NA
UHGV-0169299_5	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0169299_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169299_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169299_5	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0169299_6	UniRef90	UniRef90_A0A2N5PI32	NA	NA
UHGV-0169299_6	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0169299_6	Pfam	PF05339	NA	DUF739
UHGV-0169299_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0169299_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0169299_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0169299_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0169299_7	UniRef90	UniRef90_A0A2N5P5D9	AntA domain-containing protein	NA
UHGV-0169299_7	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-0169299_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0169299_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0169299_7	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0169299_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169299_12	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0169299_12	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0169299_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0169299_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0169299_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0169299_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0169299_13	PHROG	phrog_674	NA	unknown function
UHGV-0169299_13	UniRef90	UniRef90_UPI000462FA44	NA	NA
UHGV-0169299_13	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0169299_13	Pfam	PF07083	NA	DUF1351
UHGV-0169299_13	Structural annotation	PF07083	NA	NA
UHGV-0169299_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0169299_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169299_14	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-0169299_14	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0169299_14	Pfam	PF03837	RecT family	RecT
UHGV-0169299_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0169299_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0169299_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0169299_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0169299_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169299_15	UniRef90	UniRef90_A0A2N5PKE3	Single-stranded DNA-binding protein	NA
UHGV-0169299_15	eggNOG-mapper	626523.GCWU000342_01558	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0169299_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0169299_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0169299_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0169299_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0169299_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0169299_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169299_16	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0169299_16	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0169299_17	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0169299_17	UniRef90	UniRef90_A0A2N5PKG2	Phage_rep_org_N domain-containing protein	NA
UHGV-0169299_17	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0169299_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0169299_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0169299_17	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0169299_18	PHROG	phrog_25488	NA	unknown function
UHGV-0169299_18	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0169299_20	PHROG	phrog_17690	NA	unknown function
UHGV-0169299_20	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0169299_20	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0169299_23	PHROG	phrog_8684	NA	unknown function
UHGV-0169299_23	UniRef90	UniRef90_UPI00189FDA60	YopX family protein	NA
UHGV-0169299_23	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0169299_23	Pfam	PF09643	YopX protein	YopX
UHGV-0169299_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0169299_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0169299_24	Structural annotation	PF02895	NA	NA
UHGV-0169299_25	UniRef90	UniRef90_A0A395V1U8	Restriction alleviation protein, Lar family	NA
UHGV-0169299_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0169299_25	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0169299_27	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0169299_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169299_29	UniRef90	UniRef90_A0A1Y4H4M5	RNA polymerase subunit sigma-70	NA
UHGV-0169299_29	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0169299_29	Structural annotation	PF02996	NA	NA
UHGV-0169299_30	PHROG	phrog_32514	NA	unknown function
UHGV-0169299_31	Structural annotation	PF14524, NF041178	NA	NA
UHGV-0169299_33	PHROG	phrog_2412	NA	unknown function
UHGV-0169299_33	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0169299_33	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0169299_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169299_34	PHROG	phrog_10250	NA	unknown function
UHGV-0169299_34	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-0169299_34	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0169299_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169299_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169299_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169299_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169299_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0169299_35	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-0169299_35	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-0169299_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0169299_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0169299_36	UniRef90	UniRef90_UPI000E4FFED9	phage minor capsid protein	NA
UHGV-0169299_36	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0169299_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0169299_36	COG	COG2369	NA	NA
UHGV-0169299_36	Structural annotation	PF06152	NA	NA
UHGV-0169299_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0169299_38	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-0169299_38	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-0169299_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0169299_38	Structural annotation	PF06810	NA	NA
UHGV-0169299_39	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0169299_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0169299_40	UniRef90	UniRef90_UPI00189FFCE4	head fiber protein	NA
UHGV-0169299_40	eggNOG-mapper	435591.BDI_0884	Head fiber protein	NA
UHGV-0169299_40	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0169299_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0169299_41	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0169299_42	PHROG	phrog_3366	NA	unknown function
UHGV-0169299_42	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0169299_42	Pfam	PF20536	NA	DUF6751
UHGV-0169299_42	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0169299_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0169299_43	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-0169299_43	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0169299_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0169299_43	Structural annotation	PF11114	NA	NA
UHGV-0169299_44	PHROG	phrog_3266	tail completion	connector
UHGV-0169299_44	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-0169299_44	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0169299_44	Structural annotation	PF12691	NA	NA
UHGV-0169299_45	PHROG	phrog_3099	NA	unknown function
UHGV-0169299_45	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0169299_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169299_46	PHROG	phrog_4450	NA	unknown function
UHGV-0169299_46	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0169299_46	Pfam	PF20378	NA	DUF6673
UHGV-0169299_46	Structural annotation	PF20378	NA	NA
UHGV-0169299_47	PHROG	phrog_706	NA	unknown function
UHGV-0169299_47	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0169299_47	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0169299_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0169299_47	Structural annotation	PF06854	NA	NA
UHGV-0169299_48	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0169299_48	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-0169299_48	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0169299_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0169299_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0169299_48	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0169299_50	PHROG	phrog_28892	NA	unknown function
UHGV-0169299_50	eggNOG-mapper	1211817.CCAT010000008_gene969	NA	NA
UHGV-0169299_51	PHROG	phrog_5218	NA	unknown function
UHGV-0169299_51	UniRef90	UniRef90_UPI00191FD941	phage tail tape measure protein	NA
UHGV-0169299_51	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0169299_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0169299_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0169299_51	COG	COG4487	NA	NA
UHGV-0169299_51	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-0169299_52	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0169299_52	UniRef90	UniRef90_UPI001186E767	phage tail family protein	NA
UHGV-0169299_52	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0169299_52	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0169299_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0169299_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0169299_52	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0169299_53	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0169299_53	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0169299_53	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0169299_53	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0169299_54	PHROG	phrog_19695	NA	unknown function
UHGV-0169299_54	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0169299_54	Structural annotation	PF19714	NA	NA
UHGV-0169299_55	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0169299_55	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0169299_55	Structural annotation	PF10651, PF20328	NA	NA
UHGV-0169299_56	PHROG	phrog_199	holin	lysis
UHGV-0169299_56	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0169299_56	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0169299_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0169299_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0169299_56	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0169299_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0169299_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0169299_57	PHROG	phrog_833	endolysin	lysis
UHGV-0169299_57	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0169299_57	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0169299_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0169299_57	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0169299_57	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA