UHGV-0169302

Genome information

Genome length 33,414 bps

CDS count 45

Completeness 96.27% (high-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169302
vOTU ID	vOTU-079434
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552431
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.76
Jumbo phage	No

Genome content
Genome length	33,414 bps
GC content	45.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.37%
Average CDS length	691.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169302_1	PHROG	phrog_2598	NA	unknown function
UHGV-0169302_1	UniRef90	UniRef90_A0A8E0IRS0	NA	NA
UHGV-0169302_1	eggNOG-mapper	1423748.BALB01000015_gene1415	NA	NA
UHGV-0169302_1	Pfam	PF03235	NA	DUF262
UHGV-0169302_1	COG	COG1479	NA	NA
UHGV-0169302_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0169302_2	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0169302_2	UniRef90	UniRef90_A0A8E0ISE8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0169302_2	eggNOG-mapper	1423748.BALB01000015_gene1416	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0169302_2	PADLOC	DrmMII_00005	DrmMII	DISARM
UHGV-0169302_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0169302_2	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0169302_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0169302_2	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0169302_3	PHROG	phrog_32160	NA	unknown function
UHGV-0169302_3	UniRef90	UniRef90_UPI0006D82BFC	SH3 domain-containing protein	NA
UHGV-0169302_3	eggNOG-mapper	1114972.AUAW01000006_gene2330	NA	NA
UHGV-0169302_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0169302_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0169302_4	UniRef90	UniRef90_A0A5R8LDH3	Helix-turn-helix transcriptional regulator	NA
UHGV-0169302_4	eggNOG-mapper	1423732.BALS01000058_gene2816	Peptidase S24-like	NA
UHGV-0169302_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169302_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0169302_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0169302_4	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0169302_5	UniRef90	UniRef90_A0A5R8LDG9	Helix-turn-helix transcriptional regulator	NA
UHGV-0169302_5	eggNOG-mapper	1114972.AUAW01000009_gene2102	BetR domain	NA
UHGV-0169302_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169302_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0169302_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0169302_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0169302_6	UniRef90	UniRef90_C2FEA0	AntA/AntB antirepressor	NA
UHGV-0169302_6	eggNOG-mapper	1423732.BALS01000058_gene2817	AntA/AntB antirepressor	NA
UHGV-0169302_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0169302_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0169302_6	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0169302_7	PHROG	phrog_823	NA	unknown function
UHGV-0169302_7	UniRef90	UniRef90_UPI00194DBC78	NA	NA
UHGV-0169302_7	eggNOG-mapper	543734.LCABL_10870	NA	NA
UHGV-0169302_7	Pfam	PF05595	NA	DUF771
UHGV-0169302_8	PHROG	phrog_7103	NA	unknown function
UHGV-0169302_9	PHROG	phrog_3882	NA	unknown function
UHGV-0169302_10	PHROG	phrog_1090	NA	unknown function
UHGV-0169302_10	UniRef90	UniRef90_UPI001F4D796E	SinR family protein	NA
UHGV-0169302_10	eggNOG-mapper	797515.HMPREF9103_02406	NA	NA
UHGV-0169302_11	PHROG	phrog_5144	NA	unknown function
UHGV-0169302_11	UniRef90	UniRef90_A0A0P0I353	Transposase	NA
UHGV-0169302_12	PHROG	phrog_17254	NA	unknown function
UHGV-0169302_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0169302_13	UniRef90	UniRef90_UPI000F7858DB	siphovirus Gp157 family protein	NA
UHGV-0169302_13	eggNOG-mapper	543734.LCABL_10930	Siphovirus Gp157	NA
UHGV-0169302_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0169302_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0169302_14	PHROG	phrog_5118	NA	unknown function
UHGV-0169302_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0169302_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169302_15	UniRef90	UniRef90_A0A7M1BYQ6	DEAD/DEAH box helicase	NA
UHGV-0169302_15	eggNOG-mapper	543734.LCABL_10950	Helicase C-terminal domain protein	NA
UHGV-0169302_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0169302_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0169302_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0169302_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0169302_15	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0169302_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169302_16	UniRef90	UniRef90_A0A806EA38	Phage NTP-binding protein	NA
UHGV-0169302_16	eggNOG-mapper	543734.LCABL_10960	AAA domain	NA
UHGV-0169302_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0169302_16	COG	COG2887	RecB family exonuclease	NA
UHGV-0169302_16	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0169302_17	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169302_17	UniRef90	UniRef90_UPI001F401961	NA	NA
UHGV-0169302_17	eggNOG-mapper	543734.LCABL_10970	NA	NA
UHGV-0169302_18	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0169302_18	UniRef90	UniRef90_A0A806E228	NA	NA
UHGV-0169302_18	eggNOG-mapper	543734.LCABL_10980	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0169302_18	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0169302_18	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0169302_18	COG	COG5519	NA	NA
UHGV-0169302_18	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0169302_19	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169302_19	UniRef90	UniRef90_A0A7M1C4G7	Helicase	NA
UHGV-0169302_19	eggNOG-mapper	543734.LCABL_10990	Virulence-associated protein E	NA
UHGV-0169302_19	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0169302_19	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0169302_19	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-0169302_20	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0169302_20	UniRef90	UniRef90_K0N9N6	NA	NA
UHGV-0169302_20	eggNOG-mapper	543734.LCABL_11010	NA	NA
UHGV-0169302_21	PHROG	phrog_13069	NA	unknown function
UHGV-0169302_22	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169302_22	UniRef90	UniRef90_A0A422LLW5	Bacteriophage phi 1.45 protein-like protein	NA
UHGV-0169302_22	eggNOG-mapper	543734.LCABL_11030	HNH endonuclease	NA
UHGV-0169302_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0169302_22	Structural annotation	PF13392	NA	NA
UHGV-0169302_23	PHROG	phrog_17171	NA	unknown function
UHGV-0169302_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169302_24	UniRef90	UniRef90_K0N3N9	Phage transcriptional regulator, RinA family	NA
UHGV-0169302_24	eggNOG-mapper	543734.LCABL_11050	Transcriptional regulator, RinA family	NA
UHGV-0169302_24	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0169302_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0169302_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169302_25	UniRef90	UniRef90_K0N9P0	HNH domain-containing protein	NA
UHGV-0169302_25	eggNOG-mapper	543734.LCABL_09800	HNH endonuclease	NA
UHGV-0169302_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0169302_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0169302_26	PHROG	phrog_1066	NA	unknown function
UHGV-0169302_26	eggNOG-mapper	543734.LCABL_09810	NA	NA
UHGV-0169302_26	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0169302_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0169302_27	UniRef90	UniRef90_K0MU46	Phage terminase-like protein, large subunit	NA
UHGV-0169302_27	eggNOG-mapper	543734.LCABL_11080	overlaps another CDS with the same product name	NA
UHGV-0169302_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0169302_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0169302_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0169302_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0169302_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0169302_28	UniRef90	UniRef90_K6S8Y6	Phage-associated portal protein	NA
UHGV-0169302_28	eggNOG-mapper	543734.LCABL_11090	Phage portal protein	NA
UHGV-0169302_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0169302_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0169302_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0169302_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0169302_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0169302_29	UniRef90	UniRef90_A0A6H3FSE6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0169302_29	eggNOG-mapper	543734.LCABL_11100	Belongs to the peptidase S14 family	NA
UHGV-0169302_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0169302_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0169302_29	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0169302_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0169302_30	UniRef90	UniRef90_A0A0P0IV50	Major capsid protein	NA
UHGV-0169302_30	eggNOG-mapper	543734.LCABL_11110	Phage capsid family	NA
UHGV-0169302_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0169302_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0169302_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0169302_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0169302_32	PHROG	phrog_4609	NA	unknown function
UHGV-0169302_32	UniRef90	UniRef90_K6RR14	NA	NA
UHGV-0169302_32	eggNOG-mapper	543734.LCABL_09870	NA	NA
UHGV-0169302_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0169302_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0169302_33	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0169302_33	UniRef90	UniRef90_K0N392	Head-tail adaptor protein	NA
UHGV-0169302_33	eggNOG-mapper	543734.LCABL_09880	Phage head-tail joining protein	NA
UHGV-0169302_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0169302_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0169302_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0169302_34	UniRef90	UniRef90_K0N3E7	NA	NA
UHGV-0169302_34	eggNOG-mapper	543734.LCABL_09890	NA	NA
UHGV-0169302_34	Structural annotation	PF20765	NA	NA
UHGV-0169302_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0169302_35	UniRef90	UniRef90_UPI001C8BC514	HK97 gp10 family phage protein	NA
UHGV-0169302_35	eggNOG-mapper	543734.LCABL_09900	NA	NA
UHGV-0169302_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0169302_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0169302_35	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0169302_36	PHROG	phrog_11502	tail protein	tail
UHGV-0169302_36	UniRef90	UniRef90_A0A6H3FTM3	Major tail protein, phi13 family	NA
UHGV-0169302_36	eggNOG-mapper	543734.LCABL_09910	NA	NA
UHGV-0169302_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0169302_37	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0169302_37	UniRef90	UniRef90_K0MTV4	NA	NA
UHGV-0169302_37	eggNOG-mapper	543734.LCABL_11180	NA	NA
UHGV-0169302_37	Structural annotation	PF11836	NA	NA
UHGV-0169302_38	KOfam	K10396	KIF5; kinesin family member 5	NA
UHGV-0169302_38	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0169302_38	UniRef90	UniRef90_K0N3P8	PhageMin_Tail domain-containing protein	NA
UHGV-0169302_38	eggNOG-mapper	543734.LCABL_11200	Phage tail tape measure protein	NA
UHGV-0169302_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0169302_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0169302_38	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0169302_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0169302_39	UniRef90	UniRef90_K0N3Q3	Tail protein	NA
UHGV-0169302_39	eggNOG-mapper	543734.LCABL_09950	phage tail	NA
UHGV-0169302_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0169302_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0169302_40	PHROG	phrog_1330	tail protein	tail
UHGV-0169302_40	UniRef90	UniRef90_UPI0019520578	phage tail protein	NA
UHGV-0169302_40	eggNOG-mapper	543734.LCABL_11220	gp58-like protein	NA
UHGV-0169302_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0169302_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0169302_40	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0169302_40	Structural annotation	PF14594, PF18957, MF_04116, TIGR01665, COG4926	NA	NA
UHGV-0169302_41	PHROG	phrog_1401	NA	unknown function
UHGV-0169302_41	UniRef90	UniRef90_UPI000F775C84	NA	NA
UHGV-0169302_41	eggNOG-mapper	543734.LCABL_09970	NA	NA
UHGV-0169302_41	Pfam	PF07761	NA	DUF1617
UHGV-0169302_41	Structural annotation	PF07761	NA	NA
UHGV-0169302_42	PHROG	phrog_2566	NA	unknown function
UHGV-0169302_42	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0169302_42	eggNOG-mapper	543734.LCABL_09980	NA	NA
UHGV-0169302_43	PHROG	phrog_1009	NA	unknown function
UHGV-0169302_43	UniRef90	UniRef90_S2NA97	NA	NA
UHGV-0169302_43	eggNOG-mapper	543734.LCABL_09990	NA	NA
UHGV-0169302_44	PHROG	phrog_10091	holin	lysis
UHGV-0169302_44	UniRef90	UniRef90_UPI0018C49E9F	phage holin	NA
UHGV-0169302_44	eggNOG-mapper	543734.LCABL_10000	Bacteriophage holin	NA
UHGV-0169302_44	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0169302_44	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0169302_44	COG	COG5546	NA	NA
UHGV-0169302_44	Structural annotation	PF04531, TIGR01598	NA	NA
UHGV-0169302_45	eggNOG-mapper	543734.LCABL_11280	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0169302_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA