UHGV-0169411

Genome information

Genome length 40,014 bps

CDS count 62

Completeness 95.74% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169411
vOTU ID	vOTU-009251
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_548311
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.67
Jumbo phage	No

Genome content
Genome length	40,014 bps
GC content	49.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	95.68%
Average CDS length	620.57 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169411_2	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-0169411_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0169411_4	PHROG	phrog_263	holin	lysis
UHGV-0169411_4	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0169411_4	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0169411_4	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0169411_4	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0169411_4	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0169411_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0169411_5	UniRef90	UniRef90_A0A417J5P5	NA	NA
UHGV-0169411_5	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0169411_5	Pfam	PF14359	NA	DUF4406
UHGV-0169411_5	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0169411_6	PHROG	phrog_9428	NA	unknown function
UHGV-0169411_6	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0169411_6	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0169411_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0169411_7	PHROG	phrog_435	endolysin	lysis
UHGV-0169411_7	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0169411_7	eggNOG-mapper	665959.HMPREF1013_01301	Ami_3	NA
UHGV-0169411_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0169411_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0169411_7	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0169411_8	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0169411_8	PHROG	phrog_7158	NA	unknown function
UHGV-0169411_8	UniRef90	UniRef90_A0A1E8F0N5	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0169411_8	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0169411_8	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0169411_8	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0169411_9	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0169411_9	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0169411_10	Structural annotation	PF20622, COG5456	NA	NA
UHGV-0169411_12	PHROG	phrog_6616	tail protein	tail
UHGV-0169411_12	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0169411_13	PHROG	phrog_1194	NA	unknown function
UHGV-0169411_13	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-0169411_13	Pfam	PF20458	NA	DUF6711
UHGV-0169411_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0169411_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0169411_14	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0169411_14	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0169411_14	COG	COG1511	NA	NA
UHGV-0169411_14	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0169411_15	PHROG	phrog_706	NA	unknown function
UHGV-0169411_15	UniRef90	UniRef90_UPI00051C36A4	Gp15 family bacteriophage protein	NA
UHGV-0169411_15	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0169411_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0169411_15	Structural annotation	PF06854	NA	NA
UHGV-0169411_16	PHROG	phrog_11299	NA	unknown function
UHGV-0169411_16	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0169411_16	Structural annotation	PF10666	NA	NA
UHGV-0169411_17	PHROG	phrog_3099	NA	unknown function
UHGV-0169411_17	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0169411_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169411_18	PHROG	phrog_3266	tail completion	connector
UHGV-0169411_18	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0169411_18	Structural annotation	PF20765	NA	NA
UHGV-0169411_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0169411_19	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0169411_19	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0169411_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0169411_19	Structural annotation	PF11114	NA	NA
UHGV-0169411_20	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0169411_20	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0169411_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0169411_21	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0169411_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0169411_22	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0169411_22	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0169411_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0169411_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0169411_23	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0169411_23	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0169411_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0169411_23	Structural annotation	PF06810	NA	NA
UHGV-0169411_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0169411_25	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0169411_25	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0169411_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0169411_25	COG	COG2369	NA	NA
UHGV-0169411_25	Structural annotation	PF06152	NA	NA
UHGV-0169411_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0169411_26	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0169411_26	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0169411_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169411_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0169411_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169411_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0169411_28	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-0169411_28	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0169411_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0169411_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169411_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169411_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0169411_29	PHROG	phrog_2412	NA	unknown function
UHGV-0169411_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0169411_32	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0169411_32	UniRef90	UniRef90_UPI001C389DC7	NA	NA
UHGV-0169411_32	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0169411_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0169411_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0169411_32	Pfam	PF14386	NA	DUF4417
UHGV-0169411_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0169411_32	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0169411_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169411_34	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0169411_34	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0169411_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0169411_34	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0169411_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0169411_35	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169411_35	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0169411_35	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-0169411_35	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0169411_37	PHROG	phrog_8684	NA	unknown function
UHGV-0169411_37	UniRef90	UniRef90_UPI0006D77A88	YopX family protein	NA
UHGV-0169411_37	eggNOG-mapper	742767.HMPREF9456_02399	YopX protein	NA
UHGV-0169411_37	Pfam	PF09643	YopX protein	YopX
UHGV-0169411_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0169411_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0169411_38	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0169411_40	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0169411_40	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0169411_40	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0169411_40	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0169411_40	Pfam	PF00692	dUTPase	dUTPase
UHGV-0169411_40	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0169411_40	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0169411_40	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0169411_42	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0169411_42	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0169411_42	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0169411_42	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0169411_42	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0169411_42	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0169411_43	PHROG	phrog_2113	NA	unknown function
UHGV-0169411_43	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0169411_43	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0169411_43	Structural annotation	PF21715	NA	NA
UHGV-0169411_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0169411_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169411_44	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0169411_44	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0169411_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0169411_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0169411_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0169411_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0169411_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0169411_46	PHROG	phrog_7566	NA	unknown function
UHGV-0169411_46	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0169411_47	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0169411_48	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0169411_49	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169411_49	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0169411_49	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0169411_49	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0169411_50	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0169411_50	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0169411_50	eggNOG-mapper	1147143.K7P6T5_9CAUD	Siphovirus Gp157	NA
UHGV-0169411_50	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0169411_50	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0169411_52	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0169411_52	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0169411_52	UniRef90	UniRef90_A0A358WYE5	Beta sliding clamp	NA
UHGV-0169411_52	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0169411_52	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0169411_52	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0169411_52	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0169411_52	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0169411_52	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0169411_52	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0169411_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169411_53	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0169411_53	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0169411_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0169411_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169411_53	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-0169411_54	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0169411_54	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169411_54	UniRef90	UniRef90_UPI001C39E2EC	DNA methylase N-4	NA
UHGV-0169411_54	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0169411_54	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0169411_54	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0169411_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0169411_54	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0169411_54	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0169411_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0169411_55	eggNOG-mapper	696369.KI912183_gene1572	PFAM helix-turn-helix	NA
UHGV-0169411_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169411_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169411_55	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0169411_59	UniRef90	UniRef90_A0A348Z948	Transcriptional regulator	NA
UHGV-0169411_59	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0169411_59	Pfam	PF05339	NA	DUF739
UHGV-0169411_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0169411_59	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0169411_60	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0169411_60	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0169411_60	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-0169411_60	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0169411_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169411_60	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0169411_60	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169411_60	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0169411_61	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0169411_61	UniRef90	UniRef90_A0A415L489	NA	NA
UHGV-0169411_61	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-0169411_61	Pfam	PF12978	NA	DUF3862
UHGV-0169411_61	Structural annotation	PF12978, PF10571, MF_00925, NF008423, COG2913	NA	NA
UHGV-0169411_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0169411_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0169411_62	UniRef90	UniRef90_A0A355JGU5	Recombinase family protein	NA
UHGV-0169411_62	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0169411_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0169411_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-0169411_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0169411_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0169411_62	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA