UHGV-0169522

Genome information

Genome length 89,551 bps

CDS count 122

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169522
vOTU ID	vOTU-000002
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_553516
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.07
Jumbo phage	No

Genome content
Genome length	89,551 bps
GC content	34.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	122
CDS density	92.62%
Average CDS length	684.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169522_6	PHROG	phrog_1224	endolysin	head and packaging
UHGV-0169522_6	UniRef90	UniRef90_UPI000D1B7726	N-acetylmuramidase family protein	NA
UHGV-0169522_6	eggNOG-mapper	272559.BF9343_2740	N-acetylmuramidase	NA
UHGV-0169522_6	Pfam	PF11860	N-acetylmuramidase	Muramidase
UHGV-0169522_6	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0169522_6	Structural annotation	PF11860, NF011856	NA	NA
UHGV-0169522_7	PHROG	phrog_15610	protease	other
UHGV-0169522_7	UniRef90	UniRef90_A0A7M1RRU2	Putative zincin superfamily protease	NA
UHGV-0169522_7	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-0169522_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0169522_8	UniRef90	UniRef90_UPI000D19AB8F	DNA cytosine methyltransferase	NA
UHGV-0169522_8	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0169522_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0169522_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0169522_8	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0169522_10	Structural annotation	PF03895	NA	NA
UHGV-0169522_11	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0169522_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0169522_11	UniRef90	UniRef90_A0A1V5WTQ2	Terminase-like family protein	NA
UHGV-0169522_11	eggNOG-mapper	316274.Haur_1384	NA	NA
UHGV-0169522_11	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0169522_11	Structural annotation	PF03237, PF17289, MF_04146, NF033889, COG4373	NA	NA
UHGV-0169522_12	PHROG	phrog_3753	NA	unknown function
UHGV-0169522_12	eggNOG-mapper	1123376.AUIU01000012_gene1549	NA	NA
UHGV-0169522_12	Structural annotation	PF07230, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0169522_13	PHROG	phrog_8158	NA	unknown function
UHGV-0169522_13	Structural annotation	PF03420, TIGR01543, COG3740	NA	NA
UHGV-0169522_14	Structural annotation	COG5471	NA	NA
UHGV-0169522_15	PHROG	phrog_3922	major head protein	head and packaging
UHGV-0169522_15	UniRef90	UniRef90_UPI00148ED674	phage major capsid protein	NA
UHGV-0169522_15	eggNOG-mapper	1160721.RBI_II00400	NA	NA
UHGV-0169522_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0169522_17	UniRef90	UniRef90_UPI000D1AC5DC	PKD domain-containing protein	NA
UHGV-0169522_17	Pfam	PF18911	PKD domain	PKD_4
UHGV-0169522_17	Structural annotation	PF18911, TIGR04488	NA	NA
UHGV-0169522_18	Structural annotation	PF11649, TIGR01563, COG5614	NA	NA
UHGV-0169522_19	Structural annotation	PF15417, NF038128	NA	NA
UHGV-0169522_20	PHROG	phrog_2163	virion structural protein	head and packaging
UHGV-0169522_20	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0169522_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0169522_20	COG	COG4675	Phage tail collar domain	NA
UHGV-0169522_21	UniRef90	UniRef90_UPI00123ADEBD	BACON domain-containing protein	NA
UHGV-0169522_21	eggNOG-mapper	357276.EL88_02450	Fimbrillin-like	NA
UHGV-0169522_21	Pfam	PF13004	Putative binding domain, N-terminal	BACON
UHGV-0169522_21	Structural annotation	PF16319, MF_04116, NF038112, COG1361	NA	NA
UHGV-0169522_24	Structural annotation	PF18343	NA	NA
UHGV-0169522_25	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0169522_26	PHROG	phrog_9116	tail protein	tail
UHGV-0169522_26	UniRef90	UniRef90_A0A1V5WWW4	Phage Tail Collar Domain protein	NA
UHGV-0169522_26	eggNOG-mapper	679935.Alfi_0765	tail collar domain protein	NA
UHGV-0169522_26	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0169522_26	COG	COG4675	Phage tail collar domain	NA
UHGV-0169522_26	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0169522_27	Structural annotation	PF08873	NA	NA
UHGV-0169522_28	UniRef90	UniRef90_A0A1L5KZW2	NA	NA
UHGV-0169522_28	Structural annotation	PF06946	NA	NA
UHGV-0169522_29	KOfam	K06907	NA	NA
UHGV-0169522_29	PHROG	phrog_23	tail sheath	tail
UHGV-0169522_29	UniRef90	UniRef90_A0A1V5WRD1	Phage tail sheath protein	NA
UHGV-0169522_29	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0169522_30	UniRef90	UniRef90_A0A1V5WQM1	T4-like virus tail tube protein gp19	NA
UHGV-0169522_30	Pfam	PF06841	T4-like virus tail tube protein gp19	Phage_T4_gp19
UHGV-0169522_30	Structural annotation	PF06841, TIGR02241, COG3498	NA	NA
UHGV-0169522_32	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0169522_32	UniRef90	UniRef90_UPI001D194461	phage tail tape measure protein	NA
UHGV-0169522_32	eggNOG-mapper	631719.D4HTW4_9CAUD	amidase activity	NA
UHGV-0169522_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0169522_32	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0169522_32	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0169522_33	Structural annotation	PF19266, TIGR01603, COG3499	NA	NA
UHGV-0169522_34	PHROG	phrog_7145	baseplate wedge subunit	tail
UHGV-0169522_34	UniRef90	UniRef90_UPI001239841D	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0169522_34	eggNOG-mapper	1122182.KB903825_gene379	LysM domain	NA
UHGV-0169522_34	Pfam	PF01476	LysM domain	LysM
UHGV-0169522_34	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0169522_34	Structural annotation	PF01476, MF_02014, NF010723, COG5004	NA	NA
UHGV-0169522_35	Structural annotation	PF21683, TIGR02126, COG4672	NA	NA
UHGV-0169522_36	KOfam	K06905	NA	NA
UHGV-0169522_37	UniRef90	UniRef90_UPI00197A925F	phage baseplate assembly protein V	NA
UHGV-0169522_37	eggNOG-mapper	237368.SCABRO_00843	Rhs element vgr protein	NA
UHGV-0169522_37	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0169522_37	COG	COG3501	NA	NA
UHGV-0169522_37	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0169522_38	KOfam	K06903	NA	NA
UHGV-0169522_38	PHROG	phrog_261	baseplate wedge subunit	tail
UHGV-0169522_38	UniRef90	UniRef90_UPI00123A0F34	GPW/gp25 family protein	NA
UHGV-0169522_38	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0169522_38	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0169522_38	Structural annotation	PF04965, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0169522_39	PHROG	phrog_6	baseplate protein	tail
UHGV-0169522_39	UniRef90	UniRef90_UPI00148ED00C	baseplate J/gp47 family protein	NA
UHGV-0169522_39	eggNOG-mapper	237368.SCABRO_00839	homolog of phage Mu protein gp47	NA
UHGV-0169522_39	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0169522_39	COG	COG3299	NA	NA
UHGV-0169522_39	Structural annotation	PF21379, PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0169522_40	Structural annotation	PF09684, MF_04116, NF010681, TIGR02242, COG2373, COG4385	NA	NA
UHGV-0169522_41	UniRef90	UniRef90_J9GTV3	Membrane protein	NA
UHGV-0169522_41	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-0169522_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0169522_42	PHROG	phrog_1800	tail collar fiber protein	tail
UHGV-0169522_42	UniRef90	UniRef90_A0A1V5WG08	Collar domain-containing protein	NA
UHGV-0169522_42	eggNOG-mapper	1443665.JACA01000001_gene2556	tail collar domain protein	NA
UHGV-0169522_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0169522_43	Structural annotation	TIGR02985	NA	NA
UHGV-0169522_44	KOfam	K18947	gp41; DNA replication helicase [EC:5.6.2.3]	NA
UHGV-0169522_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0169522_44	UniRef90	UniRef90_A0A1V5WL50	Replicative DNA helicase	NA
UHGV-0169522_44	eggNOG-mapper	1220717.L7TS87_9VIRU	DnaB-like helicase C terminal domain	NA
UHGV-0169522_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0169522_44	Structural annotation	PF03796, PF00772, MF_04155, NF004384, COG0305	NA	NA
UHGV-0169522_46	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0169522_46	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0169522_46	UniRef90	UniRef90_A0A1Q1PVI3	Primase	NA
UHGV-0169522_46	eggNOG-mapper	442493.A8E2A1_BPPHE	CHC2 zinc finger	NA
UHGV-0169522_46	Structural annotation	PF01807, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0169522_48	UniRef90	UniRef90_A0A1Q1PVI0	Type III restriction endonuclease	NA
UHGV-0169522_49	KOfam	K03594	bfr; bacterioferritin [EC:1.16.3.1]	NA
UHGV-0169522_49	UniRef90	UniRef90_A0A1Q6FBF1	Ferritin domain-containing protein	NA
UHGV-0169522_49	eggNOG-mapper	445970.ALIPUT_00391	catalase activity	NA
UHGV-0169522_49	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0169522_49	Structural annotation	PF05067, MF_01441, TIGR00754, COG2193	NA	NA
UHGV-0169522_50	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0169522_50	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169522_50	UniRef90	UniRef90_UPI001680F309	DEAD/DEAH box helicase family protein	NA
UHGV-0169522_50	eggNOG-mapper	523850.TON_0393	helicase superfamily c-terminal domain	NA
UHGV-0169522_50	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0169522_50	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0169522_50	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0169522_50	Structural annotation	PF16203, PF18766, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0169522_54	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0169522_54	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0169522_54	UniRef90	UniRef90_A0A6J5SNS1	Dut dUTPase	NA
UHGV-0169522_54	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0169522_54	Pfam	PF00692	dUTPase	dUTPase
UHGV-0169522_54	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0169522_54	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0169522_55	UniRef90	UniRef90_UPI00123AD7A6	NA	NA
UHGV-0169522_56	PHROG	phrog_12184	nucleotide pyrophosphohydrolase	other
UHGV-0169522_56	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0169522_56	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0169522_57	PHROG	phrog_34294	NA	unknown function
UHGV-0169522_57	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0169522_58	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0169522_58	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0169522_58	UniRef90	UniRef90_UPI001CC20A87	thymidylate synthase	NA
UHGV-0169522_58	eggNOG-mapper	1050202.KB913024_gene1347	Thymidylate synthase	NA
UHGV-0169522_58	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0169522_58	COG	COG0207	Thymidylate synthase	NA
UHGV-0169522_58	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0169522_59	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0169522_59	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0169522_59	UniRef90	UniRef90_UPI00127AC329	DNA polymerase	NA
UHGV-0169522_59	eggNOG-mapper	998674.ATTE01000001_gene293	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0169522_59	PADLOC	drt-cluster58	DRT	DRT
UHGV-0169522_59	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0169522_59	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0169522_59	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0169522_59	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0169522_62	Structural annotation	PF11056, COG1842	NA	NA
UHGV-0169522_63	UniRef90	UniRef90_A0A1V5WR58	Co-chaperonin GroES	NA
UHGV-0169522_63	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-0169522_63	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-0169522_63	Structural annotation	PF00166, MF_00580, NF011106, COG0234	NA	NA
UHGV-0169522_64	PHROG	phrog_1192	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169522_64	UniRef90	UniRef90_A0A1V5WQT3	gp32 domain-containing protein	NA
UHGV-0169522_64	Pfam	PF08804	gp32 DNA binding protein like	gp32
UHGV-0169522_64	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0169522_65	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0169522_65	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0169522_65	UniRef90	UniRef90_A0A1V5WES9	Protein RecA	NA
UHGV-0169522_65	eggNOG-mapper	1340493.JNIF01000003_gene2802	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0169522_65	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0169522_65	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0169522_66	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0169522_66	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0169522_66	UniRef90	UniRef90_A0A2D9B6J3	53EXOc domain-containing protein	NA
UHGV-0169522_66	eggNOG-mapper	1415779.JOMH01000001_gene316	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0169522_66	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0169522_66	Pfam	PF01367	5'-3' exonuclease, C-terminal SAM fold	5_3_exonuc
UHGV-0169522_66	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0169522_66	Structural annotation	PF02739, PF01367, MF_01192, NF011546, COG0258	NA	NA
UHGV-0169522_67	UniRef90	UniRef90_UPI0010FD83AD	AAA family ATPase	NA
UHGV-0169522_67	Pfam	PF13521	AAA domain	AAA_28
UHGV-0169522_67	Structural annotation	PF13521, MF_00109, TIGR01526, COG3911	NA	NA
UHGV-0169522_68	KOfam	K03547	sbcD, mre11; DNA repair protein SbcD/Mre11	NA
UHGV-0169522_68	PHROG	phrog_100	SbcD-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169522_68	UniRef90	UniRef90_UPI00148EE614	metallophosphoesterase	NA
UHGV-0169522_68	eggNOG-mapper	562982.HMPREF0432_00478	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity	NA
UHGV-0169522_68	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0169522_68	COG	COG0420	DNA repair exonuclease SbcCD nuclease subunit	NA
UHGV-0169522_68	Structural annotation	PF19050, MF_02044, NF041031, COG0420	NA	NA
UHGV-0169522_69	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0169522_69	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169522_69	UniRef90	UniRef90_A0A2D9B6J9	AAA_23 domain-containing protein	NA
UHGV-0169522_69	eggNOG-mapper	1026955.F5B3S5_9CAUD	exonuclease activity	NA
UHGV-0169522_69	Pfam	PF13476	AAA domain	AAA_23
UHGV-0169522_69	Pfam	PF13558	SbcC/RAD50-like, Walker B motif	SbcC_Walker_B
UHGV-0169522_69	Structural annotation	PF13166, MF_00449, NF003034, COG0419	NA	NA
UHGV-0169522_70	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169522_70	eggNOG-mapper	221915.Q6Y7N9_BPPGK	NA	NA
UHGV-0169522_70	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0169522_71	Structural annotation	PF02357, PF20884, MF_00948, TIGR00922, COG0250	NA	NA
UHGV-0169522_72	Structural annotation	PF04545, MF_00674, NF005248	NA	NA
UHGV-0169522_74	Structural annotation	PF17906	NA	NA
UHGV-0169522_78	Structural annotation	PF13028, TIGR04550	NA	NA
UHGV-0169522_79	Structural annotation	PF07875, MF_01506, TIGR04535, COG5577	NA	NA
UHGV-0169522_80	Structural annotation	PF02403, PF05005, NF001981, COG2157	NA	NA
UHGV-0169522_84	PHROG	phrog_3292	NA	unknown function
UHGV-0169522_84	UniRef90	UniRef90_A0A8I0H6Q6	KTSC domain-containing protein	NA
UHGV-0169522_84	eggNOG-mapper	756067.MicvaDRAFT_3521	KTSC domain	NA
UHGV-0169522_84	Pfam	PF13619	KTSC domain	KTSC
UHGV-0169522_84	COG	COG4249	NA	NA
UHGV-0169522_84	Structural annotation	PF13619	NA	NA
UHGV-0169522_93	eggNOG-mapper	1347393.HG726021_gene701	NA	NA
UHGV-0169522_93	Structural annotation	PF09465, COG0231	NA	NA
UHGV-0169522_96	Structural annotation	COG4585	NA	NA