UHGV-0169957

Genome information

vOTU vOTU-019703

Genome length 29,846 bps

CDS count 50

Completeness 77.04% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169957
vOTU ID	vOTU-019703
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552201
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.43
Jumbo phage	No

Genome content
Genome length	29,846 bps
GC content	41.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.84%
Average CDS length	558.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169957_1	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0169957_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0169957_3	Structural annotation	PF11836	NA	NA
UHGV-0169957_4	PHROG	phrog_158	major tail protein	tail
UHGV-0169957_4	UniRef90	UniRef90_A0A173W733	Phage tail protein	NA
UHGV-0169957_4	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0169957_4	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0169957_4	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0169957_5	Structural annotation	PF05657	NA	NA
UHGV-0169957_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0169957_6	UniRef90	UniRef90_A0A173W5Z4	Phage protein, HK97 gp10 family	NA
UHGV-0169957_6	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0169957_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0169957_6	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0169957_6	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0169957_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0169957_8	Structural annotation	PF05135	NA	NA
UHGV-0169957_10	PHROG	phrog_267	major head protein	head and packaging
UHGV-0169957_10	UniRef90	UniRef90_A0A173W8U9	p22 coat protein-gene protein 5	NA
UHGV-0169957_10	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0169957_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0169957_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0169957_11	UniRef90	UniRef90_UPI00189A8A5B	NA	NA
UHGV-0169957_11	eggNOG-mapper	1443125.Z962_07915	NA	NA
UHGV-0169957_11	Pfam	PF14265	NA	DUF4355
UHGV-0169957_12	PHROG	phrog_918	NA	unknown function
UHGV-0169957_12	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0169957_12	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0169957_12	Pfam	PF19791	NA	DUF6275
UHGV-0169957_12	Structural annotation	PF19791	NA	NA
UHGV-0169957_13	PHROG	phrog_872	NA	unknown function
UHGV-0169957_13	UniRef90	UniRef90_A0A3R6QU45	NA	NA
UHGV-0169957_13	eggNOG-mapper	1123288.SOV_4c02650	NA	NA
UHGV-0169957_13	Pfam	PF11195	NA	DUF2829
UHGV-0169957_13	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0169957_13	Structural annotation	PF11195	NA	NA
UHGV-0169957_14	UniRef90	UniRef90_A0A1M6RFQ4	Aspartyl protease	NA
UHGV-0169957_14	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0169957_14	Structural annotation	PF13650, TIGR02281, COG5550	NA	NA
UHGV-0169957_15	UniRef90	UniRef90_A0A416UY02	Glutamyl-tRNA amidotransferase	NA
UHGV-0169957_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0169957_16	UniRef90	UniRef90_A0A6N9K285	Phage_Mu_F domain-containing protein	NA
UHGV-0169957_16	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0169957_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0169957_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0169957_16	COG	COG2369	NA	NA
UHGV-0169957_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0169957_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0169957_17	UniRef90	UniRef90_A0A173W966	Phage portal protein, SPP1 family	NA
UHGV-0169957_17	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0169957_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169957_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0169957_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0169957_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169957_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0169957_18	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0169957_18	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0169957_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169957_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0169957_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169957_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169957_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169957_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0169957_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0169957_19	UniRef90	UniRef90_A0A416IA81	Terminase small subunit	NA
UHGV-0169957_19	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0169957_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0169957_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0169957_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0169957_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169957_20	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0169957_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0169957_20	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0169957_23	PHROG	phrog_9300	NA	unknown function
UHGV-0169957_23	UniRef90	UniRef90_F2F2I1	Predicted ATPase	NA
UHGV-0169957_25	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0169957_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0169957_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0169957_26	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0169957_26	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0169957_26	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0169957_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0169957_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0169957_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0169957_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169957_27	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0169957_27	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0169957_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169957_27	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0169957_30	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0169957_31	PHROG	phrog_9804	NA	unknown function
UHGV-0169957_31	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0169957_31	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0169957_31	AcrCatalog	cluster_137185	NA	NA
UHGV-0169957_31	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0169957_31	Structural annotation	PF11417	NA	NA
UHGV-0169957_34	PHROG	phrog_16304	NA	unknown function
UHGV-0169957_34	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0169957_34	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0169957_34	Pfam	PF19808	NA	DUF6291
UHGV-0169957_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0169957_34	Structural annotation	PF19808	NA	NA
UHGV-0169957_35	eggNOG-mapper	457412.RSAG_00329	NA	NA
UHGV-0169957_36	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169957_36	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0169957_36	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0169957_36	Pfam	PF06356	NA	DUF1064
UHGV-0169957_36	Structural annotation	PF06356	NA	NA
UHGV-0169957_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0169957_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0169957_37	UniRef90	UniRef90_A0A416ZXI3	Recombinase	NA
UHGV-0169957_37	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0169957_37	Pfam	PF03837	RecT family	RecT
UHGV-0169957_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0169957_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0169957_37	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0169957_39	PHROG	phrog_674	NA	unknown function
UHGV-0169957_39	UniRef90	UniRef90_UPI00156FBAC2	NA	NA
UHGV-0169957_39	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0169957_39	Pfam	PF07083	NA	DUF1351
UHGV-0169957_39	Structural annotation	PF07083	NA	NA
UHGV-0169957_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169957_41	UniRef90	UniRef90_A0A3R6XK93	Recombinase	NA
UHGV-0169957_41	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0169957_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0169957_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0169957_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0169957_42	PHROG	phrog_6058	NA	unknown function
UHGV-0169957_42	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0169957_43	UniRef90	UniRef90_A0A173W999	Helix-turn-helix domain	NA
UHGV-0169957_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169957_44	PHROG	phrog_3202	NA	unknown function
UHGV-0169957_44	UniRef90	UniRef90_A0A1Y4R5Y7	YjzC family protein	NA
UHGV-0169957_44	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0169957_44	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0169957_44	Structural annotation	PF14168	NA	NA
UHGV-0169957_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0169957_47	UniRef90	UniRef90_A0A3E2TSC3	XRE family transcriptional regulator	NA
UHGV-0169957_47	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0169957_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169957_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169957_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0169957_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0169957_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0169957_48	UniRef90	UniRef90_A0A417PKX0	XRE family transcriptional regulator	NA
UHGV-0169957_48	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0169957_48	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0169957_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0169957_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169957_48	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0169957_49	UniRef90	UniRef90_UPI00189DFA3E	SAP domain-containing protein	NA
UHGV-0169957_49	eggNOG-mapper	1282664.H354_06896	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0169957_49	Pfam	PF02037	SAP domain	SAP
UHGV-0169957_50	KOfam	K14059	int; integrase	NA
UHGV-0169957_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0169957_50	UniRef90	UniRef90_A0A417W6N2	Site-specific integrase	NA
UHGV-0169957_50	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0169957_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169957_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0169957_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA