UHGV-0169959

Genome information

Genome length 29,655 bps

CDS count 46

Completeness 73.42% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169959
vOTU ID	vOTU-022398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552203
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.73
Jumbo phage	No

Genome content
Genome length	29,655 bps
GC content	47.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.25%
Average CDS length	607.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169959_1	KOfam	K14059	int; integrase	NA
UHGV-0169959_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0169959_1	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-0169959_1	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0169959_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0169959_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169959_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0169959_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0169959_2	UniRef90	UniRef90_A0A8E3SGJ6	PASTA domain-containing protein	NA
UHGV-0169959_2	eggNOG-mapper	700015.Corgl_0782	NA	NA
UHGV-0169959_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0169959_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0169959_3	UniRef90	UniRef90_UPI001C11074E	XRE family transcriptional regulator	NA
UHGV-0169959_3	eggNOG-mapper	458233.MCCL_1543	Peptidase S24-like	NA
UHGV-0169959_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0169959_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0169959_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0169959_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0169959_4	UniRef90	UniRef90_L1Q6Z0	DNA-binding helix-turn-helix protein	NA
UHGV-0169959_4	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0169959_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169959_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169959_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0169959_7	UniRef90	UniRef90_A0A1B1HZZ8	Toxin Bro	NA
UHGV-0169959_7	eggNOG-mapper	1280692.AUJL01000022_gene553	BRO family, N-terminal domain	NA
UHGV-0169959_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0169959_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169959_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0169959_7	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0169959_8	UniRef90	UniRef90_UPI001C0FDD58	helix-turn-helix domain-containing protein	NA
UHGV-0169959_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0169959_8	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0169959_8	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0169959_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0169959_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169959_11	UniRef90	UniRef90_UPI001C3ABD54	AAA family ATPase	NA
UHGV-0169959_11	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0169959_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-0169959_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0169959_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0169959_12	PHROG	phrog_862	NA	unknown function
UHGV-0169959_12	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0169959_12	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0169959_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0169959_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0169959_13	UniRef90	UniRef90_UPI001D0E92C3	MBL fold metallo-hydrolase	NA
UHGV-0169959_13	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0169959_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0169959_13	dbAPIS	APIS062	NA	NA
UHGV-0169959_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0169959_13	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0169959_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0169959_14	UniRef90	UniRef90_UPI001CBF2F6A	replication terminator protein	NA
UHGV-0169959_14	eggNOG-mapper	120574.Q94M63_9CAUD	NA	NA
UHGV-0169959_15	PHROG	phrog_1029	NA	unknown function
UHGV-0169959_15	eggNOG-mapper	1211817.CCAT010000049_gene2467	NA	NA
UHGV-0169959_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0169959_16	PHROG	phrog_16304	NA	unknown function
UHGV-0169959_16	UniRef90	UniRef90_UPI00191FEC8B	NA	NA
UHGV-0169959_16	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0169959_16	Pfam	PF19808	NA	DUF6291
UHGV-0169959_18	PHROG	phrog_33866	NA	unknown function
UHGV-0169959_21	PHROG	phrog_15198	NA	unknown function
UHGV-0169959_21	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0169959_21	Pfam	PF04448	NA	DUF551
UHGV-0169959_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0169959_22	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0169959_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0169959_24	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0169959_24	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0169959_24	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0169959_26	Structural annotation	NF007312, COG2336	NA	NA
UHGV-0169959_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0169959_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0169959_28	UniRef90	UniRef90_A0A1Y4STJ0	Terminase small subunit	NA
UHGV-0169959_28	eggNOG-mapper	97138.C820_00222	Terminase small subunit	NA
UHGV-0169959_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0169959_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0169959_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0169959_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169959_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0169959_29	UniRef90	UniRef90_UPI0011DD220B	PBSX family phage terminase large subunit	NA
UHGV-0169959_29	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0169959_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169959_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0169959_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0169959_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169959_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0169959_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0169959_30	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-0169959_30	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0169959_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0169959_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0169959_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0169959_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0169959_31	UniRef90	UniRef90_A0A359MQ04	Phage_Mu_F domain-containing protein	NA
UHGV-0169959_31	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0169959_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0169959_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0169959_31	COG	COG2369	NA	NA
UHGV-0169959_32	PHROG	phrog_34144	NA	unknown function
UHGV-0169959_32	eggNOG-mapper	908338.HMPREF9286_0178	NA	NA
UHGV-0169959_32	Structural annotation	PF20111	NA	NA
UHGV-0169959_33	KOfam	K07584	NA	NA
UHGV-0169959_33	PHROG	phrog_4478	peptidase	other
UHGV-0169959_33	UniRef90	UniRef90_A0A3A5TG51	Ribosomal-processing cysteine protease Prp	NA
UHGV-0169959_33	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0169959_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0169959_33	COG	COG2868	NA	NA
UHGV-0169959_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0169959_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0169959_34	UniRef90	UniRef90_A0A7Y9B0R9	NA	NA
UHGV-0169959_34	eggNOG-mapper	272558.10176153	NA	NA
UHGV-0169959_34	Pfam	PF14265	NA	DUF4355
UHGV-0169959_34	Structural annotation	PF14265	NA	NA
UHGV-0169959_35	PHROG	phrog_840	major head protein	head and packaging
UHGV-0169959_35	UniRef90	UniRef90_A0A354IE74	Phage capsid protein	NA
UHGV-0169959_35	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0169959_35	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0169959_36	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0169959_36	UniRef90	UniRef90_A0A3N5YZ51	Rho termination protein	NA
UHGV-0169959_36	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-0169959_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0169959_37	UniRef90	UniRef90_UPI0011DDAA65	phage head-tail connector protein	NA
UHGV-0169959_37	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0169959_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0169959_37	Structural annotation	PF05135	NA	NA
UHGV-0169959_38	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0169959_38	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0169959_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0169959_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0169959_39	UniRef90	UniRef90_UPI001E5A2719	HK97 gp10 family phage protein	NA
UHGV-0169959_39	eggNOG-mapper	1567453.A0A0A1ENQ3_9CAUD	exonuclease activity	NA
UHGV-0169959_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0169959_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0169959_39	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0169959_40	PHROG	phrog_176	tail terminator	connector
UHGV-0169959_40	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0169959_40	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0169959_40	Structural annotation	PF11367	NA	NA
UHGV-0169959_41	PHROG	phrog_238	major tail protein	tail
UHGV-0169959_41	UniRef90	UniRef90_A0A416RWE8	Phage major tail protein, TP901-1 family	NA
UHGV-0169959_41	eggNOG-mapper	556261.HMPREF0240_01276	Phage tail tube protein	NA
UHGV-0169959_41	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0169959_41	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0169959_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169959_42	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0169959_42	UniRef90	UniRef90_A0A1M6RGW0	Phage tail assembly chaperone protein, TAC	NA
UHGV-0169959_42	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0169959_42	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0169959_42	Structural annotation	PF12363	NA	NA
UHGV-0169959_43	PHROG	phrog_1204	tail protein	tail
UHGV-0169959_43	UniRef90	UniRef90_UPI001E448465	tape measure protein	NA
UHGV-0169959_43	eggNOG-mapper	1302286.BAOT01000008_gene610	phage tail tape measure protein	NA
UHGV-0169959_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0169959_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0169959_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0169959_43	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0169959_44	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0169959_44	UniRef90	UniRef90_A0A3E2TS69	Phage tail family protein	NA
UHGV-0169959_44	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-0169959_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0169959_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0169959_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0169959_44	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0169959_45	PHROG	phrog_9478	minor tail protein	tail
UHGV-0169959_45	UniRef90	UniRef90_UPI0008DA1694	phage tail protein	NA
UHGV-0169959_45	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0169959_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0169959_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA