UHGV-0169961

Genome information

vOTU vOTU-019704

Genome length 28,118 bps

CDS count 37

Completeness 60.90% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169961
vOTU ID	vOTU-019704
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552206
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.71
Jumbo phage	No

Genome content
Genome length	28,118 bps
GC content	45.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.89%
Average CDS length	709.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169961_1	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-0169961_1	PHROG	phrog_1569	NA	unknown function
UHGV-0169961_1	UniRef90	UniRef90_A0A3D2D5Z0	Methionine adenosyltransferase	NA
UHGV-0169961_1	eggNOG-mapper	1378168.N510_03361	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	NA
UHGV-0169961_1	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-0169961_1	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-0169961_1	NCBIFam	TIGR01034.1	methionine adenosyltransferase	NA
UHGV-0169961_1	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0169961_2	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0169961_2	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0169961_2	UniRef90	UniRef90_A0A3D2D1Z4	Sigma70_r2 domain-containing protein	NA
UHGV-0169961_2	eggNOG-mapper	1120746.CCNL01000010_gene1166	Sigma-70 region 2	NA
UHGV-0169961_2	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0169961_2	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0169961_2	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0169961_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0169961_2	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-0169961_4	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0169961_4	UniRef90	UniRef90_A0A3D2D3A3	Virulence associated protein (Fragment)	NA
UHGV-0169961_4	eggNOG-mapper	610130.Closa_3128	COG NOG18822 non supervised orthologous group	NA
UHGV-0169961_4	AcrCatalog	cluster_16277	NA	NA
UHGV-0169961_4	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0169961_4	Structural annotation	PF12224	NA	NA
UHGV-0169961_5	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0169961_5	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0169961_5	UniRef90	UniRef90_A0A3D2D272	Gamma-glutamylcyclotransferase	NA
UHGV-0169961_5	eggNOG-mapper	445972.ANACOL_02316	PFAM AIG2 family protein	NA
UHGV-0169961_5	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0169961_5	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0169961_5	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0169961_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0169961_6	UniRef90	UniRef90_A0A3D2D1X4	Terminase	NA
UHGV-0169961_6	eggNOG-mapper	1414720.CBYM010000005_gene1368	Terminase	NA
UHGV-0169961_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0169961_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0169961_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0169961_6	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0169961_7	eggNOG-mapper	633697.EubceDRAFT1_2933	NA	NA
UHGV-0169961_8	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0169961_8	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0169961_8	UniRef90	UniRef90_A0A7X8ZXD2	Methyltransferase	NA
UHGV-0169961_8	eggNOG-mapper	573061.Clocel_0772	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0169961_8	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0169961_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0169961_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0169961_8	COG	COG0863	DNA modification methylase	NA
UHGV-0169961_8	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0169961_9	PHROG	phrog_2555	NA	unknown function
UHGV-0169961_9	eggNOG-mapper	1111121.HMPREF1247_1227	NA	NA
UHGV-0169961_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0169961_10	UniRef90	UniRef90_UPI000B97DE72	phage portal protein	NA
UHGV-0169961_10	eggNOG-mapper	573061.Clocel_0780	Phage portal protein, HK97 family	NA
UHGV-0169961_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0169961_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0169961_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0169961_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0169961_11	KOfam	K06904	NA	NA
UHGV-0169961_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0169961_11	UniRef90	UniRef90_UPI000F52B158	HK97 family phage prohead protease	NA
UHGV-0169961_11	eggNOG-mapper	573061.Clocel_0781	Phage prohead protease, HK97 family	NA
UHGV-0169961_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0169961_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0169961_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0169961_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0169961_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0169961_12	UniRef90	UniRef90_D9SSF5	Phage major capsid protein, HK97 family	NA
UHGV-0169961_12	eggNOG-mapper	573061.Clocel_0782	Phage capsid family	NA
UHGV-0169961_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0169961_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0169961_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0169961_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0169961_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0169961_13	UniRef90	UniRef90_A0A4P8A1T4	Phage gp6-like head-tail connector protein	NA
UHGV-0169961_13	eggNOG-mapper	1286171.EAL2_808p01750	Phage gp6-like head-tail connector protein	NA
UHGV-0169961_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0169961_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0169961_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0169961_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0169961_14	UniRef90	UniRef90_A0A1B8T6R4	Head-tail adaptor protein	NA
UHGV-0169961_14	eggNOG-mapper	398512.JQKC01000005_gene5453	Phage head-tail joining protein	NA
UHGV-0169961_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0169961_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0169961_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0169961_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0169961_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0169961_15	UniRef90	UniRef90_UPI0010EDA23B	HK97 gp10 family phage protein	NA
UHGV-0169961_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0169961_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0169961_15	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0169961_16	eggNOG-mapper	398512.JQKC01000005_gene5455	NA	NA
UHGV-0169961_16	Pfam	PF11367	NA	DUF3168
UHGV-0169961_16	Structural annotation	PF11367	NA	NA
UHGV-0169961_17	PHROG	phrog_1407	major tail protein	tail
UHGV-0169961_17	UniRef90	UniRef90_UPI0010EBAD88	phage tail protein	NA
UHGV-0169961_17	eggNOG-mapper	398512.JQKC01000005_gene5456	NA	NA
UHGV-0169961_17	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0169961_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0169961_18	PHROG	phrog_34587	NA	unknown function
UHGV-0169961_18	eggNOG-mapper	398512.JQKC01000005_gene5459	NA	NA
UHGV-0169961_18	Structural annotation	PF19591	NA	NA
UHGV-0169961_19	PHROG	phrog_19318	NA	unknown function
UHGV-0169961_19	eggNOG-mapper	398512.JQKC01000005_gene5460	NA	NA
UHGV-0169961_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0169961_20	UniRef90	UniRef90_A0A1G5EF29	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0169961_20	eggNOG-mapper	387631.Asulf_01539	Phage tail tape measure protein TP901	NA
UHGV-0169961_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0169961_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0169961_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0169961_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0169961_21	PHROG	phrog_1194	NA	unknown function
UHGV-0169961_21	eggNOG-mapper	645991.Sgly_0353	NA	NA
UHGV-0169961_21	Pfam	PF20458	NA	DUF6711
UHGV-0169961_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0169961_22	PHROG	phrog_13879	NA	unknown function
UHGV-0169961_22	UniRef90	UniRef90_A0A1V5IFK2	NA	NA
UHGV-0169961_22	eggNOG-mapper	645991.Sgly_0356	NA	NA
UHGV-0169961_22	Structural annotation	PF14594, PF00754, NF033848, COG3500, COG5156	NA	NA
UHGV-0169961_24	Structural annotation	PF16640, NF033510, COG4549	NA	NA
UHGV-0169961_27	PHROG	phrog_24267	NA	unknown function
UHGV-0169961_27	UniRef90	UniRef90_A0A516LG32	Putative baseplate wedge protein	NA
UHGV-0169961_27	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0169961_27	Structural annotation	COG4675	NA	NA
UHGV-0169961_28	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-0169961_29	PHROG	phrog_9428	NA	unknown function
UHGV-0169961_29	UniRef90	UniRef90_A0A3D0LZL5	Serine/threonine protein kinase	NA
UHGV-0169961_29	eggNOG-mapper	1449050.JNLE01000005_gene4825	NA	NA
UHGV-0169961_30	PHROG	phrog_1129	holin	lysis
UHGV-0169961_30	UniRef90	UniRef90_A0A1G6ETY7	Phage holin family Hol44, holin superfamily V	NA
UHGV-0169961_30	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0169961_30	Structural annotation	PF06946	NA	NA
UHGV-0169961_32	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0169961_32	PHROG	phrog_95	integrase	integration and excision
UHGV-0169961_32	UniRef90	UniRef90_UPI000984C2A9	recombinase family protein	NA
UHGV-0169961_32	eggNOG-mapper	646529.Desaci_1340	Similarity to COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0169961_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0169961_32	Pfam	PF07508	Recombinase	Recombinase
UHGV-0169961_32	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0169961_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0169961_32	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0169961_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0169961_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0169961_33	UniRef90	UniRef90_UPI000987B26F	recombinase family protein	NA
UHGV-0169961_33	eggNOG-mapper	748727.CLJU_c03770	resolvase	NA
UHGV-0169961_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0169961_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0169961_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0169961_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0169961_33	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0169961_34	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0169961_34	UniRef90	UniRef90_A0A3D5PF53	Transcriptional regulator	NA
UHGV-0169961_34	eggNOG-mapper	1232437.KL662061_gene4153	Helix-turn-helix XRE-family like proteins	NA
UHGV-0169961_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169961_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0169961_34	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0169961_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0169961_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0169961_35	UniRef90	UniRef90_A0A3D5PES9	Cytosine-specific methyltransferase	NA
UHGV-0169961_35	eggNOG-mapper	264731.PRU_0938	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0169961_35	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0169961_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0169961_35	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0169961_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0169961_35	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0169961_36	UniRef90	UniRef90_A0A3D5PE65	Restriction endonuclease	NA
UHGV-0169961_36	eggNOG-mapper	411465.PEPMIC_01414	HaeIII restriction endonuclease	NA
UHGV-0169961_36	PADLOC	REase_II_00032	Type II restriction enzyme	RM
UHGV-0169961_36	Pfam	PF09556	HaeIII restriction endonuclease	RE_HaeIII
UHGV-0169961_37	PHROG	phrog_4740	NA	unknown function
UHGV-0169961_37	UniRef90	UniRef90_UPI00189FE9FB	P-loop NTPase fold protein	NA
UHGV-0169961_37	eggNOG-mapper	857290.HMPREF9156_00844	KAP family P-loop domain	NA
UHGV-0169961_37	PADLOC	ATPase_Blast	NA	NA
UHGV-0169961_37	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0169961_37	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA