UHGV-0169964

Genome information

Genome length 25,863 bps

CDS count 31

Completeness 66.30% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169964
vOTU ID	vOTU-028452
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_521239
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.73
Jumbo phage	No

Genome content
Genome length	25,863 bps
GC content	56.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	90.07%
Average CDS length	753.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169964_1	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0169964_1	PHROG	phrog_1499	NA	unknown function
UHGV-0169964_1	UniRef90	UniRef90_A0A1Q6JHZ0	AAA_23 domain-containing protein	NA
UHGV-0169964_1	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-0169964_1	Pfam	PF13476	AAA domain	AAA_23
UHGV-0169964_1	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0169964_1	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0169964_2	PHROG	phrog_21613	NA	unknown function
UHGV-0169964_2	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0169964_3	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169964_3	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0169964_3	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-0169964_3	Pfam	PF12684	NA	DUF3799
UHGV-0169964_3	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0169964_3	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0169964_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0169964_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0169964_4	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0169964_4	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0169964_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0169964_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0169964_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0169964_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0169964_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0169964_5	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0169964_5	PHROG	phrog_11992	NA	unknown function
UHGV-0169964_5	UniRef90	UniRef90_A0A352RPQ9	ZnF_CHCC domain-containing protein	NA
UHGV-0169964_5	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0169964_5	PADLOC	drt-cluster192	DRT	DRT
UHGV-0169964_5	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0169964_5	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0169964_5	Structural annotation	PF01807	NA	NA
UHGV-0169964_6	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0169964_6	UniRef90	UniRef90_UPI00164DBC57	NA	NA
UHGV-0169964_6	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0169964_6	Pfam	PF06048	NA	DUF927
UHGV-0169964_6	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0169964_6	COG	COG5519	NA	NA
UHGV-0169964_6	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0169964_7	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0169964_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0169964_7	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-0169964_7	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0169964_7	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0169964_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0169964_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0169964_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0169964_7	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0169964_8	PHROG	phrog_824	NA	unknown function
UHGV-0169964_8	UniRef90	UniRef90_A0A352RPQ6	VRR-NUC domain-containing protein	NA
UHGV-0169964_8	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0169964_8	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0169964_8	Structural annotation	PF08774	NA	NA
UHGV-0169964_10	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169964_10	UniRef90	UniRef90_A0A352RPQ2	HNH endonuclease	NA
UHGV-0169964_10	eggNOG-mapper	293826.Amet_2599	HNH endonuclease	NA
UHGV-0169964_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0169964_10	Structural annotation	PF13392	NA	NA
UHGV-0169964_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169964_12	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0169964_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169964_12	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-0169964_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0169964_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0169964_14	UniRef90	UniRef90_A0A352RPP9	XRE family transcriptional regulator	NA
UHGV-0169964_14	eggNOG-mapper	203119.Cthe_0364	Helix-turn-helix XRE-family like proteins	NA
UHGV-0169964_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169964_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169964_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0169964_15	eggNOG-mapper	1519439.JPJG01000014_gene76	NA	NA
UHGV-0169964_16	UniRef90	UniRef90_A0A352RPP8	HNH endonuclease	NA
UHGV-0169964_16	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0169964_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0169964_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0169964_17	UniRef90	UniRef90_A0A3D3AGI6	Phage terminase small subunit P27 family	NA
UHGV-0169964_17	eggNOG-mapper	903814.ELI_1295	phage terminase small subunit	NA
UHGV-0169964_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0169964_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0169964_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0169964_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0169964_18	UniRef90	UniRef90_UPI00094E5B34	terminase large subunit	NA
UHGV-0169964_18	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-0169964_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0169964_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0169964_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0169964_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0169964_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0169964_19	UniRef90	UniRef90_A0A096CMX9	Phage portal protein	NA
UHGV-0169964_19	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-0169964_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0169964_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0169964_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0169964_19	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0169964_20	KOfam	K06904	NA	NA
UHGV-0169964_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0169964_20	UniRef90	UniRef90_UPI00094E7C9A	HK97 family phage prohead protease	NA
UHGV-0169964_20	eggNOG-mapper	742738.HMPREF9460_01365	Phage prohead protease, HK97 family	NA
UHGV-0169964_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0169964_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0169964_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0169964_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0169964_21	UniRef90	UniRef90_A0A1C7FKD0	Phage capsid protein	NA
UHGV-0169964_21	eggNOG-mapper	742738.HMPREF9460_01366	Phage capsid family	NA
UHGV-0169964_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0169964_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0169964_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0169964_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0169964_23	eggNOG-mapper	742738.HMPREF9460_01368	Phage gp6-like head-tail connector protein	NA
UHGV-0169964_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0169964_24	PHROG	phrog_29848	NA	unknown function
UHGV-0169964_24	eggNOG-mapper	1121334.KB911073_gene1861	NA	NA
UHGV-0169964_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0169964_25	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0169964_26	eggNOG-mapper	1291050.JAGE01000001_gene2926	NA	NA
UHGV-0169964_26	Pfam	PF20765	NA	DUF6838
UHGV-0169964_26	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0169964_27	PHROG	phrog_1480	tail sheath	tail
UHGV-0169964_27	UniRef90	UniRef90_A0A352RPN7	Phage tail sheath protein	NA
UHGV-0169964_27	eggNOG-mapper	1297617.JPJD01000034_gene682	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0169964_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0169964_28	PHROG	phrog_365	tail protein	tail
UHGV-0169964_28	UniRef90	UniRef90_A0A352RPN6	Phage portal protein	NA
UHGV-0169964_28	eggNOG-mapper	1291050.JAGE01000001_gene2928	Phage tail tube protein	NA
UHGV-0169964_28	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0169964_28	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0169964_29	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0169964_29	UniRef90	UniRef90_UPI00067E8B26	XkdN	NA
UHGV-0169964_29	eggNOG-mapper	1297617.JPJD01000034_gene680	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0169964_29	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0169964_29	Structural annotation	PF08890	NA	NA
UHGV-0169964_30	PHROG	phrog_33570	NA	unknown function
UHGV-0169964_30	UniRef90	UniRef90_A0A352RPN3	Phage tail protein	NA
UHGV-0169964_30	eggNOG-mapper	1291050.JAGE01000001_gene2931	tape measure	NA
UHGV-0169964_30	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0169964_30	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0169964_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0169964_30	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0169964_31	PHROG	phrog_380	endolysin	lysis
UHGV-0169964_31	UniRef90	UniRef90_A0A352RPN2	Peptidoglycan-binding protein	NA
UHGV-0169964_31	eggNOG-mapper	1297617.JPJD01000034_gene677	LysM domain	NA
UHGV-0169964_31	Pfam	PF01476	LysM domain	LysM
UHGV-0169964_31	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0169964_31	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA