UHGV-0169983

Genome information

Genome length 40,798 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0169983
vOTU ID	vOTU-046398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_513051
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.3
Jumbo phage	No

Genome content
Genome length	40,798 bps
GC content	58.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.36%
Average CDS length	688.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0169983_1	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0169983_1	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0169983_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0169983_1	Structural annotation	NF033743	NA	NA
UHGV-0169983_3	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0169983_3	PHROG	phrog_9764	NA	unknown function
UHGV-0169983_3	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0169983_3	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0169983_3	PADLOC	AbiQ	AbiQ	Abi
UHGV-0169983_3	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0169983_3	Structural annotation	PF13958	NA	NA
UHGV-0169983_6	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0169983_6	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0169983_7	KOfam	K14059	int; integrase	NA
UHGV-0169983_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0169983_7	UniRef90	UniRef90_A0A8F2JBJ7	Site-specific integrase	NA
UHGV-0169983_7	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0169983_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0169983_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0169983_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0169983_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0169983_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169983_8	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0169983_12	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0169983_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0169983_12	UniRef90	UniRef90_A0A350VVA2	XRE family transcriptional regulator	NA
UHGV-0169983_12	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0169983_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0169983_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0169983_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0169983_15	Structural annotation	PF10548	NA	NA
UHGV-0169983_17	Structural annotation	NF041247	NA	NA
UHGV-0169983_18	Structural annotation	PF05082	NA	NA
UHGV-0169983_22	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0169983_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0169983_22	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0169983_22	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0169983_22	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0169983_22	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0169983_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0169983_22	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0169983_23	PHROG	phrog_3136	NA	unknown function
UHGV-0169983_23	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0169983_23	Pfam	PF04266	ASCH domain	ASCH
UHGV-0169983_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0169983_23	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0169983_24	PHROG	phrog_38832	NA	unknown function
UHGV-0169983_24	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0169983_27	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0169983_27	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0169983_27	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0169983_27	Pfam	PF06356	NA	DUF1064
UHGV-0169983_27	Structural annotation	PF06356	NA	NA
UHGV-0169983_29	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0169983_29	eggNOG-mapper	387344.LVIS_0713	NA	NA
UHGV-0169983_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0169983_31	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0169983_31	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0169983_31	Structural annotation	PF08271	NA	NA
UHGV-0169983_32	PHROG	phrog_9467	NA	unknown function
UHGV-0169983_32	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-0169983_32	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0169983_32	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0169983_32	dbAPIS	APIS043	NA	NA
UHGV-0169983_32	Structural annotation	PF13876	NA	NA
UHGV-0169983_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0169983_33	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0169983_33	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0169983_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0169983_34	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0169983_34	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0169983_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0169983_34	Structural annotation	PF16677	NA	NA
UHGV-0169983_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0169983_35	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0169983_35	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0169983_35	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0169983_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0169983_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0169983_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0169983_36	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0169983_36	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0169983_36	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0169983_37	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0169983_38	PHROG	phrog_37329	NA	unknown function
UHGV-0169983_38	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0169983_38	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0169983_38	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0169983_40	PHROG	phrog_156	portal protein	head and packaging
UHGV-0169983_40	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0169983_40	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0169983_41	PHROG	phrog_13908	NA	unknown function
UHGV-0169983_41	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0169983_42	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0169983_42	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0169983_42	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0169983_42	Pfam	PF13252	NA	DUF4043
UHGV-0169983_42	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0169983_42	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0169983_44	PHROG	phrog_12105	NA	unknown function
UHGV-0169983_44	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0169983_45	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0169983_45	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0169983_46	PHROG	phrog_22978	NA	unknown function
UHGV-0169983_46	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0169983_46	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0169983_47	PHROG	phrog_33872	NA	unknown function
UHGV-0169983_47	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0169983_48	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0169983_49	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0169983_49	PHROG	phrog_819	tail protein	tail
UHGV-0169983_49	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0169983_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0169983_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0169983_50	eggNOG-mapper	742738.HMPREF9460_02534	NA	NA
UHGV-0169983_50	Pfam	PF19789	NA	DUF6273
UHGV-0169983_50	Structural annotation	PF19789	NA	NA
UHGV-0169983_52	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0169983_52	Structural annotation	PF14600	NA	NA
UHGV-0169983_55	PHROG	phrog_6918	holin	lysis
UHGV-0169983_55	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0169983_55	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0169983_55	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0169983_55	Structural annotation	PF09682, TIGR01673	NA	NA