UHGV-0170098

Genome information

Genome length 32,613 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9552

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170098
vOTU ID	vOTU-004001
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_529150
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9552
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.75
Jumbo phage	No

Genome content
Genome length	32,613 bps
GC content	43.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.66%
Average CDS length	646.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170098_1	PHROG	phrog_4973	NA	unknown function
UHGV-0170098_1	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0170098_1	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0170098_2	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170098_2	UniRef90	UniRef90_O80148	E12	NA
UHGV-0170098_2	eggNOG-mapper	31532.O21903_BPLSK	NA	NA
UHGV-0170098_2	Pfam	PF06378	NA	DUF1071
UHGV-0170098_2	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0170098_4	PHROG	phrog_6244	NA	unknown function
UHGV-0170098_4	eggNOG-mapper	742767.HMPREF9456_02056	NA	NA
UHGV-0170098_4	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0170098_5	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0170098_5	UniRef90	UniRef90_A0A353J4N0	ERCC4 domain-containing protein	NA
UHGV-0170098_5	eggNOG-mapper	742742.HMPREF9452_00432	NA	NA
UHGV-0170098_5	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0170098_5	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0170098_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170098_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170098_7	UniRef90	UniRef90_A0A7V6T1P4	Single-stranded DNA-binding protein	NA
UHGV-0170098_7	eggNOG-mapper	1392491.JIAE01000001_gene2290	Single-stranded DNA-binding protein	NA
UHGV-0170098_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170098_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170098_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170098_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170098_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0170098_8	Pfam	PF19808	NA	DUF6291
UHGV-0170098_9	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0170098_9	eggNOG-mapper	1123288.SOV_2c05410	DNA-templated transcription, initiation	NA
UHGV-0170098_9	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0170098_9	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0170098_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0170098_10	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0170098_10	UniRef90	UniRef90_B9E634	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170098_10	eggNOG-mapper	431943.CKL_3292	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0170098_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0170098_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0170098_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170098_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0170098_10	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0170098_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0170098_12	UniRef90	UniRef90_A0A1V5R8G8	PAPS_reduct domain-containing protein	NA
UHGV-0170098_12	eggNOG-mapper	1256908.HMPREF0373_02094	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0170098_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0170098_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0170098_12	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0170098_13	PHROG	phrog_20532	NA	unknown function
UHGV-0170098_13	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0170098_14	PHROG	phrog_20532	NA	unknown function
UHGV-0170098_14	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0170098_14	Pfam	PF04266	ASCH domain	ASCH
UHGV-0170098_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0170098_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0170098_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0170098_16	UniRef90	UniRef90_A0A3E3E030	Methyltransferase	NA
UHGV-0170098_16	eggNOG-mapper	742740.HMPREF9474_02900	DNA methylase	NA
UHGV-0170098_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0170098_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0170098_16	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0170098_16	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0170098_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170098_17	UniRef90	UniRef90_UPI00096B5DBE	NA	NA
UHGV-0170098_17	eggNOG-mapper	935837.JAEK01000027_gene1656	NA	NA
UHGV-0170098_17	Pfam	PF07374	NA	DUF1492
UHGV-0170098_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0170098_17	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0170098_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0170098_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0170098_20	eggNOG-mapper	458233.MCCL_0920	NA	NA
UHGV-0170098_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0170098_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0170098_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170098_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0170098_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0170098_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0170098_23	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0170098_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0170098_25	Structural annotation	PF05065, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0170098_35	Structural annotation	PF09097, COG3500	NA	NA
UHGV-0170098_37	PHROG	phrog_13892	minor tail protein	tail
UHGV-0170098_37	eggNOG-mapper	525373.HMPREF0766_12439	NA	NA
UHGV-0170098_43	KOfam	K14059	int; integrase	NA
UHGV-0170098_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0170098_43	UniRef90	UniRef90_A0A2Z4GUA2	Integrase	NA
UHGV-0170098_43	eggNOG-mapper	198467.NP92_04310	Phage integrase family	NA
UHGV-0170098_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0170098_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170098_44	UniRef90	UniRef90_A0A2Z4GUA9	Helix-turn-helix XRE-family like protein	NA
UHGV-0170098_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170098_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0170098_47	eggNOG-mapper	1378168.N510_00491	NA	NA
UHGV-0170098_47	Structural annotation	PF03869, NF008671, COG4877	NA	NA