UHGV-0170189

Genome information

Genome length 41,162 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170189
vOTU ID	vOTU-001211
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_504277
BioSample	SAMN06165341
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.17
Jumbo phage	No

Genome content
Genome length	41,162 bps
GC content	49.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.98%
Average CDS length	778.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170189_1	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-0170189_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0170189_1	UniRef90	UniRef90_R6ISY1	Extracellular nuclease	NA
UHGV-0170189_1	eggNOG-mapper	2754.EH55_03895	alpha-ribazole phosphatase activity	NA
UHGV-0170189_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0170189_1	COG	COG0406	Broad specificity phosphatase PhoE	NA
UHGV-0170189_2	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-0170189_3	PHROG	phrog_4105	NA	unknown function
UHGV-0170189_3	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0170189_4	PHROG	phrog_263	holin	lysis
UHGV-0170189_4	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-0170189_4	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0170189_4	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0170189_4	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0170189_4	Structural annotation	PF04688	NA	NA
UHGV-0170189_5	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-0170189_5	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0170189_5	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-0170189_6	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0170189_6	UniRef90	UniRef90_A0A3D1VGG3	Hexulose-6-phosphate isomerase	NA
UHGV-0170189_6	eggNOG-mapper	1235803.C825_02971	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0170189_6	Structural annotation	COG1724	NA	NA
UHGV-0170189_7	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0170189_7	UniRef90	UniRef90_UPI001E454195	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0170189_7	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-0170189_7	Pfam	PF05534	HicB family	HicB
UHGV-0170189_7	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0170189_7	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-0170189_10	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0170189_10	PHROG	phrog_95	integrase	integration and excision
UHGV-0170189_10	UniRef90	UniRef90_A0A1Q6LBY2	Recombinase domain-containing protein	NA
UHGV-0170189_10	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0170189_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0170189_10	Pfam	PF07508	Recombinase	Recombinase
UHGV-0170189_10	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0170189_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0170189_10	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0170189_12	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-0170189_12	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0170189_12	COG	COG5492	NA	NA
UHGV-0170189_13	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0170189_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0170189_13	UniRef90	UniRef90_A0A6N9NXR9	Helix-turn-helix domain-containing protein	NA
UHGV-0170189_13	eggNOG-mapper	796940.HMPREF9628_00178	Peptidase S24-like	NA
UHGV-0170189_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0170189_13	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0170189_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170189_13	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0170189_14	UniRef90	UniRef90_UPI000F520C3B	helix-turn-helix domain-containing protein	NA
UHGV-0170189_14	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0170189_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0170189_14	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0170189_15	PHROG	phrog_26314	NA	unknown function
UHGV-0170189_16	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0170189_16	PHROG	phrog_923	NA	unknown function
UHGV-0170189_16	UniRef90	UniRef90_UPI001A9BFF4A	pentapeptide repeat-containing protein	NA
UHGV-0170189_16	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0170189_16	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0170189_16	Pfam	PF13576	Pentapeptide repeats (9 copies)	Pentapeptide_3
UHGV-0170189_16	Pfam	PF19062	NA	DUF5758
UHGV-0170189_16	COG	COG1357	NA	NA
UHGV-0170189_16	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0170189_17	PHROG	phrog_33952	NA	unknown function
UHGV-0170189_20	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0170189_20	UniRef90	UniRef90_R6J0Q7	NA	NA
UHGV-0170189_20	eggNOG-mapper	1227360.C176_12583	Siphovirus Gp157	NA
UHGV-0170189_20	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0170189_20	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0170189_21	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170189_21	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0170189_21	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0170189_21	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0170189_22	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0170189_22	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0170189_22	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0170189_22	Structural annotation	PF05772	NA	NA
UHGV-0170189_23	PHROG	phrog_7566	NA	unknown function
UHGV-0170189_23	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0170189_23	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0170189_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170189_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170189_24	UniRef90	UniRef90_R6JMM3	Single-stranded DNA-binding protein	NA
UHGV-0170189_24	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0170189_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170189_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170189_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170189_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170189_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0170189_25	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0170189_25	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0170189_25	eggNOG-mapper	1461580.CCAS010000067_gene4022	DnaD domain protein	NA
UHGV-0170189_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170189_25	Structural annotation	PF12793, NF033788, COG0640	NA	NA
UHGV-0170189_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0170189_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0170189_27	UniRef90	UniRef90_A0A0L0WED4	Holliday junction resolvase	NA
UHGV-0170189_27	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0170189_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0170189_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0170189_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0170189_30	PHROG	phrog_6721	NA	unknown function
UHGV-0170189_30	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0170189_30	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0170189_31	Pfam	PF04448	NA	DUF551
UHGV-0170189_32	PHROG	phrog_8684	NA	unknown function
UHGV-0170189_32	UniRef90	UniRef90_A0A7X8MKX7	YopX domain-containing protein	NA
UHGV-0170189_32	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0170189_32	Pfam	PF09643	YopX protein	YopX
UHGV-0170189_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0170189_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0170189_34	PHROG	phrog_10714	NA	unknown function
UHGV-0170189_34	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0170189_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0170189_35	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0170189_35	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0170189_35	Pfam	PF14359	NA	DUF4406
UHGV-0170189_35	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0170189_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0170189_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0170189_36	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0170189_36	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0170189_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-0170189_36	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0170189_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0170189_36	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0170189_38	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0170189_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170189_39	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0170189_39	UniRef90	UniRef90_R6IPR7	Conserved domain protein	NA
UHGV-0170189_39	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0170189_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0170189_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0170189_39	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0170189_40	PHROG	phrog_156	portal protein	head and packaging
UHGV-0170189_40	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0170189_40	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0170189_41	KOfam	K07584	NA	NA
UHGV-0170189_41	PHROG	phrog_4478	peptidase	other
UHGV-0170189_41	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0170189_41	COG	COG2868	NA	NA
UHGV-0170189_41	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0170189_42	PHROG	phrog_13908	NA	unknown function
UHGV-0170189_42	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0170189_43	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0170189_43	UniRef90	UniRef90_A0A1I0BH03	Major capsid protein, N4-gp56 family	NA
UHGV-0170189_43	eggNOG-mapper	748224.HMPREF9436_02545	NA	NA
UHGV-0170189_43	Pfam	PF13252	NA	DUF4043
UHGV-0170189_43	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0170189_43	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0170189_45	PHROG	phrog_12105	NA	unknown function
UHGV-0170189_45	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0170189_46	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0170189_46	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0170189_46	Structural annotation	PF11134, MF_01605, NF038128, COG1520	NA	NA
UHGV-0170189_50	PHROG	phrog_22978	NA	unknown function
UHGV-0170189_50	UniRef90	UniRef90_R6ILN9	MuF_C domain-containing protein	NA
UHGV-0170189_50	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0170189_50	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal