UHGV-0170217

Genome information

Genome length 45,041 bps

CDS count 62

Completeness 84.32% (medium-quality)

geNomad score 0.9529

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170217
vOTU ID	vOTU-016195
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_500357
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	7
Recoded stop codon	No

Viral signal
geNomad score	0.9529
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.63
Jumbo phage	No

Genome content
Genome length	45,041 bps
GC content	45.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.15%
Average CDS length	651.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170217_1	KOfam	K06177	rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]	NA
UHGV-0170217_1	PHROG	phrog_9266	NA	unknown function
UHGV-0170217_1	UniRef90	UniRef90_B0MVM9	Pseudouridine synthase, RluA family	NA
UHGV-0170217_1	eggNOG-mapper	445970.ALIPUT_01176	Pseudouridine synthase, RluA family	NA
UHGV-0170217_1	Pfam	PF00849	RNA pseudouridylate synthase	PseudoU_synth_2
UHGV-0170217_1	COG	COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	NA
UHGV-0170217_2	eggNOG-mapper	445970.ALIPUT_01177	NA	NA
UHGV-0170217_3	UniRef90	UniRef90_A0A7G2MC94	Cell filamentation protein Fic	NA
UHGV-0170217_3	eggNOG-mapper	445970.ALIPUT_01178	Toxin-antitoxin system, toxin component, Fic	NA
UHGV-0170217_3	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0170217_3	COG	COG3943	NA	NA
UHGV-0170217_3	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0170217_4	PHROG	phrog_15620	NA	unknown function
UHGV-0170217_4	UniRef90	UniRef90_UPI0004AE850B	NA	NA
UHGV-0170217_4	eggNOG-mapper	445970.ALIPUT_01179	NA	NA
UHGV-0170217_4	PADLOC	KwaB_00008	NA	Kiwa
UHGV-0170217_5	eggNOG-mapper	445970.ALIPUT_01179	NA	NA
UHGV-0170217_5	PADLOC	KwaB_00008	NA	Kiwa
UHGV-0170217_6	eggNOG-mapper	445970.ALIPUT_01180	NA	NA
UHGV-0170217_6	PADLOC	KwaA_00003	NA	Kiwa
UHGV-0170217_7	KOfam	K06926	NA	NA
UHGV-0170217_7	PHROG	phrog_5836	NA	unknown function
UHGV-0170217_7	UniRef90	UniRef90_B0MVN4	ATPase_AAA_core domain-containing protein	NA
UHGV-0170217_7	eggNOG-mapper	445970.ALIPUT_01181	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-0170217_7	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-0170217_7	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0170217_7	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0170217_7	Structural annotation	PF13304, MF_00365, NF041760, COG4637	NA	NA
UHGV-0170217_8	UniRef90	UniRef90_T1CPI2	Nuclease	NA
UHGV-0170217_8	eggNOG-mapper	1029718.SFBM_0762	NA	NA
UHGV-0170217_9	KOfam	K22684	MCA1; metacaspase-1 [EC:3.4.22.-]	NA
UHGV-0170217_9	PHROG	phrog_18397	NA	unknown function
UHGV-0170217_9	UniRef90	UniRef90_B0MVR6	Caspase domain protein	NA
UHGV-0170217_9	eggNOG-mapper	445970.ALIPUT_01182	protein containing caspase domain	NA
UHGV-0170217_9	PADLOC	caspase	NA	NA
UHGV-0170217_9	Pfam	PF00656	Caspase domain	Peptidase_C14
UHGV-0170217_9	COG	COG4249	NA	NA
UHGV-0170217_10	UniRef90	UniRef90_B0MVR7	TIR domain-containing protein	NA
UHGV-0170217_10	eggNOG-mapper	404589.Anae109_4001	TIR domain	NA
UHGV-0170217_10	PADLOC	ThsB1_00006	TIR-like	Thoeris
UHGV-0170217_10	Pfam	PF13676	TIR domain	TIR_2
UHGV-0170217_11	PHROG	phrog_12550	NA	unknown function
UHGV-0170217_11	eggNOG-mapper	1236508.BAKF01000013_gene1295	NA	NA
UHGV-0170217_12	UniRef90	UniRef90_UPI001C7359CC	Eco57I restriction-modification methylase domain-containing protein	NA
UHGV-0170217_12	eggNOG-mapper	445970.ALIPUT_01184	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0170217_12	PADLOC	MTase_II_00161	Type II methyltransferase	RM
UHGV-0170217_12	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0170217_13	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0170217_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0170217_13	UniRef90	UniRef90_UPI001EEF5A5C	Eco57I restriction-modification methylase domain-containing protein	NA
UHGV-0170217_13	eggNOG-mapper	445970.ALIPUT_01185	Eco57I restriction-modification methylase	NA
UHGV-0170217_13	PADLOC	MTase_II_00161	Type II methyltransferase	RM
UHGV-0170217_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0170217_13	Pfam	PF07669	Eco57I restriction-modification methylase	Eco57I
UHGV-0170217_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0170217_13	Structural annotation	PF04851, PF16203, MF_01821, TIGR04095, COG1061	NA	NA
UHGV-0170217_14	UniRef90	UniRef90_A0A4V3RIK5	Restriction endonuclease subunit M	NA
UHGV-0170217_14	eggNOG-mapper	445970.ALIPUT_01186	restriction	NA
UHGV-0170217_14	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0170217_14	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0170217_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0170217_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0170217_15	UniRef90	UniRef90_A0A7K3MGD7	Site-specific integrase	NA
UHGV-0170217_15	eggNOG-mapper	445970.ALIPUT_01187	Phage integrase SAM-like domain	NA
UHGV-0170217_15	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0170217_15	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0170217_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170217_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170217_15	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0170217_16	UniRef90	UniRef90_A0A3E4NMT4	MobA protein	NA
UHGV-0170217_16	eggNOG-mapper	445970.ALIPUT_01188	NA	NA
UHGV-0170217_16	Pfam	PF19514	MobC-like protein	MobC_2
UHGV-0170217_16	NCBIFam	NF041324.1	conjugal transfer protein MobA	NA
UHGV-0170217_16	Structural annotation	PF19514, NF041324	NA	NA
UHGV-0170217_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0170217_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0170217_17	UniRef90	UniRef90_B0MVS4	Site-specific recombinase, phage integrase family	NA
UHGV-0170217_17	eggNOG-mapper	445970.ALIPUT_01190	Arm DNA-binding domain	NA
UHGV-0170217_17	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0170217_17	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0170217_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170217_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0170217_17	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0170217_18	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0170217_18	PHROG	phrog_12747	NA	unknown function
UHGV-0170217_18	UniRef90	UniRef90_A0A143XMN3	Adenosine monophosphate-protein transferase NmFic	NA
UHGV-0170217_18	eggNOG-mapper	679935.Alfi_0457	FIC family	NA
UHGV-0170217_18	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0170217_18	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0170217_18	Structural annotation	PF02661, NF007672, COG2184	NA	NA
UHGV-0170217_19	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0170217_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170217_19	UniRef90	UniRef90_UPI001D07EDE9	helix-turn-helix transcriptional regulator	NA
UHGV-0170217_19	eggNOG-mapper	679935.Alfi_0456	DNA-binding helix-turn-helix protein	NA
UHGV-0170217_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170217_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0170217_19	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0170217_21	PHROG	phrog_1086	NA	unknown function
UHGV-0170217_21	UniRef90	UniRef90_UPI001D0859DC	SH3 beta-barrel fold-containing protein	NA
UHGV-0170217_21	eggNOG-mapper	435591.BDI_0847	NA	NA
UHGV-0170217_21	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0170217_21	Structural annotation	PF10902	NA	NA
UHGV-0170217_28	UniRef90	UniRef90_A0A143XL61	Helix-turn-helix domain protein	NA
UHGV-0170217_28	eggNOG-mapper	880526.KE386488_gene1381	Helix-turn-helix domain	NA
UHGV-0170217_28	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0170217_28	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0170217_29	Structural annotation	PF14090, MF_01909, NF038251, COG5625	NA	NA
UHGV-0170217_30	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0170217_30	UniRef90	UniRef90_R6YAW6	NA	NA
UHGV-0170217_30	eggNOG-mapper	367737.Abu_1347	NA	NA
UHGV-0170217_30	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0170217_30	Structural annotation	PF19808	NA	NA
UHGV-0170217_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0170217_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0170217_31	UniRef90	UniRef90_A0A143XJX6	DNA helicase	NA
UHGV-0170217_31	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0170217_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0170217_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0170217_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0170217_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0170217_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0170217_32	UniRef90	UniRef90_A0A088C3S3	Terminase small subunit	NA
UHGV-0170217_32	eggNOG-mapper	445970.ALIPUT_01194	NA	NA
UHGV-0170217_32	Structural annotation	PF07141	NA	NA
UHGV-0170217_33	eggNOG-mapper	1235803.C825_02655	NA	NA
UHGV-0170217_36	PHROG	phrog_16646	NA	unknown function
UHGV-0170217_36	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-0170217_36	Pfam	PF20449	NA	DUF6706
UHGV-0170217_36	Structural annotation	PF20449	NA	NA
UHGV-0170217_37	PHROG	phrog_13251	NA	unknown function
UHGV-0170217_37	Structural annotation	PF20536	NA	NA
UHGV-0170217_38	PHROG	phrog_5377	NA	unknown function
UHGV-0170217_38	UniRef90	UniRef90_UPI0008DA4DD0	HK97 gp10 family phage protein	NA
UHGV-0170217_38	eggNOG-mapper	445970.ALIPUT_00701	NA	NA
UHGV-0170217_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0170217_39	PHROG	phrog_5597	NA	unknown function
UHGV-0170217_39	Structural annotation	PF05657	NA	NA
UHGV-0170217_40	PHROG	phrog_6767	NA	unknown function
UHGV-0170217_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0170217_41	Structural annotation	PF20336	NA	NA
UHGV-0170217_42	PHROG	phrog_10156	NA	unknown function
UHGV-0170217_42	eggNOG-mapper	445970.ALIPUT_00697	NA	NA
UHGV-0170217_43	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0170217_43	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0170217_43	UniRef90	UniRef90_B0MUJ0	TMP_3 domain-containing protein	NA
UHGV-0170217_43	eggNOG-mapper	445970.ALIPUT_00696	NA	NA
UHGV-0170217_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0170217_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0170217_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0170217_43	Structural annotation	PF20155, PF16535, TIGR01760, COG3941	NA	NA
UHGV-0170217_44	PHROG	phrog_6305	tail protein	tail
UHGV-0170217_44	eggNOG-mapper	445970.ALIPUT_00695	NA	NA
UHGV-0170217_48	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0170217_48	PHROG	phrog_15286	NA	unknown function
UHGV-0170217_48	UniRef90	UniRef90_B0MVP8	Bro-N domain-containing protein	NA
UHGV-0170217_48	eggNOG-mapper	445970.ALIPUT_01209	BRO family, N-terminal domain	NA
UHGV-0170217_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170217_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0170217_48	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0170217_49	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0170217_49	UniRef90	UniRef90_B0MVP7	ORF6N domain-containing protein	NA
UHGV-0170217_49	eggNOG-mapper	445970.ALIPUT_01207	PFAM ORF6N domain	NA
UHGV-0170217_49	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0170217_49	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0170217_49	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0170217_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170217_50	UniRef90	UniRef90_UPI00189C57CC	helix-turn-helix transcriptional regulator	NA
UHGV-0170217_50	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-0170217_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170217_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0170217_50	Structural annotation	PF01381, TIGR02684, COG1396	NA	NA
UHGV-0170217_51	UniRef90	UniRef90_UPI001897821C	NA	NA
UHGV-0170217_51	eggNOG-mapper	1203611.KB894559_gene22	NA	NA
UHGV-0170217_51	Pfam	PF11171	NA	DUF2958
UHGV-0170217_51	COG	COG3616	D-serine deaminase, pyridoxal phosphate-dependent	NA
UHGV-0170217_51	Structural annotation	PF11171	NA	NA
UHGV-0170217_53	eggNOG-mapper	445970.ALIPUT_01201	NA	NA
UHGV-0170217_54	PHROG	phrog_1086	NA	unknown function
UHGV-0170217_54	UniRef90	UniRef90_A0A316PBT4	NA	NA
UHGV-0170217_54	eggNOG-mapper	445970.ALIPUT_01200	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0170217_54	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0170217_54	Structural annotation	PF10902	NA	NA
UHGV-0170217_56	PHROG	phrog_625	NA	unknown function
UHGV-0170217_56	UniRef90	UniRef90_B0MVT1	ASCH domain-containing protein	NA
UHGV-0170217_56	eggNOG-mapper	445970.ALIPUT_01197	NA	NA
UHGV-0170217_56	Pfam	PF04266	ASCH domain	ASCH
UHGV-0170217_57	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0170217_57	UniRef90	UniRef90_B0MVT0	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0170217_57	eggNOG-mapper	445970.ALIPUT_01196	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0170217_57	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0170217_57	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0170217_57	Structural annotation	PF01507, MF_00063, TIGR02057, COG0175	NA	NA
UHGV-0170217_58	PHROG	phrog_9353	NA	unknown function
UHGV-0170217_58	UniRef90	UniRef90_B0MVS9	ParB domain-containing protein	NA
UHGV-0170217_58	eggNOG-mapper	445970.ALIPUT_01195	NA	NA
UHGV-0170217_58	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0170217_58	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0170217_58	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0170217_59	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0170217_59	UniRef90	UniRef90_A0A516M3I5	HTH_8 domain-containing protein	NA
UHGV-0170217_59	eggNOG-mapper	445970.ALIPUT_01194	NA	NA
UHGV-0170217_59	Structural annotation	PF07141	NA	NA
UHGV-0170217_60	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0170217_60	UniRef90	UniRef90_A0A174JFB0	Transposase and inactivated derivatives	NA
UHGV-0170217_60	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0170217_60	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0170217_60	COG	COG5410	NA	NA
UHGV-0170217_60	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0170217_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0170217_61	UniRef90	UniRef90_B0MVS6	Putative phage portal protein, SPP1 family	NA
UHGV-0170217_61	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0170217_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0170217_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0170217_62	PHROG	phrog_35295	NA	unknown function
UHGV-0170217_62	UniRef90	UniRef90_A0A143XJU3	LPD3 domain-containing protein	NA
UHGV-0170217_62	eggNOG-mapper	445970.ALIPUT_01191	NA	NA
UHGV-0170217_62	Structural annotation	PF06152	NA	NA