UHGV-0170243

Genome information

Genome length 36,766 bps

CDS count 47

Completeness 80.12% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170243
vOTU ID	vOTU-016557
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_558696
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.55
Jumbo phage	No

Genome content
Genome length	36,766 bps
GC content	41.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.24%
Average CDS length	731.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170243_1	PHROG	phrog_20637	NA	unknown function
UHGV-0170243_1	UniRef90	UniRef90_A0A3D2HPD9	Catalase	NA
UHGV-0170243_1	eggNOG-mapper	1160721.RBI_I00418	NA	NA
UHGV-0170243_1	Pfam	PF18907	NA	DUF5662
UHGV-0170243_1	Structural annotation	PF18907	NA	NA
UHGV-0170243_2	UniRef90	UniRef90_UPI001C10E8F8	NA	NA
UHGV-0170243_2	eggNOG-mapper	428125.CLOLEP_01608	NA	NA
UHGV-0170243_2	Pfam	PF19538	NA	DUF6062
UHGV-0170243_5	PHROG	phrog_18190	NA	unknown function
UHGV-0170243_5	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0170243_6	PHROG	phrog_1194	NA	unknown function
UHGV-0170243_6	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0170243_6	Pfam	PF20458	NA	DUF6711
UHGV-0170243_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0170243_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0170243_7	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0170243_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0170243_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0170243_7	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0170243_10	PHROG	phrog_706	NA	unknown function
UHGV-0170243_10	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0170243_10	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0170243_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0170243_10	Structural annotation	PF06854	NA	NA
UHGV-0170243_11	PHROG	phrog_11299	NA	unknown function
UHGV-0170243_11	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0170243_11	Structural annotation	PF10666	NA	NA
UHGV-0170243_12	PHROG	phrog_3099	NA	unknown function
UHGV-0170243_12	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0170243_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0170243_13	PHROG	phrog_3266	tail completion	connector
UHGV-0170243_13	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0170243_13	Structural annotation	PF20765	NA	NA
UHGV-0170243_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0170243_14	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0170243_14	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0170243_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0170243_14	Structural annotation	PF11114	NA	NA
UHGV-0170243_15	PHROG	phrog_3366	NA	unknown function
UHGV-0170243_15	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0170243_15	Pfam	PF20536	NA	DUF6751
UHGV-0170243_15	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0170243_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0170243_16	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0170243_16	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0170243_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0170243_17	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0170243_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0170243_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0170243_18	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0170243_18	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0170243_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0170243_18	Structural annotation	PF06810	NA	NA
UHGV-0170243_19	PHROG	phrog_2616	NA	unknown function
UHGV-0170243_19	Structural annotation	PF01281	NA	NA
UHGV-0170243_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0170243_21	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0170243_21	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0170243_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0170243_21	COG	COG2369	NA	NA
UHGV-0170243_21	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0170243_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0170243_22	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0170243_22	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0170243_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0170243_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170243_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0170243_23	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0170243_23	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0170243_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0170243_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0170243_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0170243_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0170243_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0170243_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170243_24	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0170243_24	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0170243_24	Pfam	PF07374	NA	DUF1492
UHGV-0170243_24	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0170243_25	PHROG	phrog_8684	NA	unknown function
UHGV-0170243_25	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0170243_25	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0170243_25	Pfam	PF09643	YopX protein	YopX
UHGV-0170243_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0170243_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0170243_28	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0170243_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0170243_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0170243_29	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0170243_29	eggNOG-mapper	1235798.C817_03497	Endodeoxyribonuclease RusA	NA
UHGV-0170243_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0170243_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0170243_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0170243_30	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0170243_30	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0170243_30	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0170243_30	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0170243_30	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0170243_30	Pfam	PF13481	AAA domain	AAA_25
UHGV-0170243_30	COG	COG3598	RecA-family ATPase	NA
UHGV-0170243_30	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0170243_31	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0170243_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0170243_31	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0170243_31	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-0170243_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0170243_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0170243_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0170243_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0170243_31	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0170243_32	PHROG	phrog_2698	NA	unknown function
UHGV-0170243_32	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0170243_32	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0170243_32	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0170243_33	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170243_33	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0170243_33	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0170243_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0170243_33	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0170243_35	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0170243_35	PHROG	phrog_1499	NA	unknown function
UHGV-0170243_35	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0170243_35	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0170243_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0170243_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0170243_35	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0170243_36	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170243_36	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0170243_36	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0170243_36	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0170243_36	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0170243_38	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0170243_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0170243_41	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0170243_41	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0170243_41	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0170243_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170243_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170243_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0170243_42	PHROG	phrog_3773	NA	unknown function
UHGV-0170243_42	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0170243_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0170243_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170243_44	UniRef90	UniRef90_A0A1G5CKS8	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0170243_44	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-0170243_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170243_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0170243_44	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0170243_45	PHROG	phrog_5783	NA	unknown function
UHGV-0170243_45	UniRef90	UniRef90_R5XZX4	NYN domain-containing protein	NA
UHGV-0170243_45	eggNOG-mapper	742742.HMPREF9452_01315	NYN domain	NA
UHGV-0170243_45	Pfam	PF01936	NYN domain	NYN
UHGV-0170243_45	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0170243_45	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0170243_46	PHROG	phrog_7395	NA	unknown function
UHGV-0170243_46	UniRef90	UniRef90_A0A417IT12	NA	NA
UHGV-0170243_46	eggNOG-mapper	29306.JOBE01000009_gene6854	NA	NA
UHGV-0170243_46	Pfam	PF14015	NA	DUF4231
UHGV-0170243_46	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0170243_47	PHROG	phrog_419	NA	unknown function
UHGV-0170243_47	UniRef90	UniRef90_A0A096BXT9	Sugar ABC transporter substrate-binding protein	NA
UHGV-0170243_47	eggNOG-mapper	1401067.HMPREF0872_03940	NA	NA