UHGV-0170316

Genome information

Genome length 37,592 bps

CDS count 57

Completeness 90.21% (high-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170316
vOTU ID	vOTU-066338
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539925
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.14
Jumbo phage	No

Genome content
Genome length	37,592 bps
GC content	37.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.48%
Average CDS length	607.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170316_3	eggNOG-mapper	1235800.C819_03386	NA	NA
UHGV-0170316_3	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-0170316_5	UniRef90	UniRef90_A0A0B0S655	HEPN domain-containing protein	NA
UHGV-0170316_5	eggNOG-mapper	880071.Fleli_2062	NA	NA
UHGV-0170316_5	Pfam	PF05168	HEPN domain	HEPN
UHGV-0170316_5	Structural annotation	PF05168, COG1895	NA	NA
UHGV-0170316_8	PHROG	phrog_1129	holin	lysis
UHGV-0170316_8	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0170316_8	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0170316_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0170316_8	Structural annotation	PF16079	NA	NA
UHGV-0170316_10	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0170316_10	PHROG	phrog_7698	endolysin	lysis
UHGV-0170316_10	UniRef90	UniRef90_UPI0009861559	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0170316_10	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0170316_10	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0170316_10	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0170316_10	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0170316_12	PHROG	phrog_24267	NA	unknown function
UHGV-0170316_12	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0170316_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0170316_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0170316_12	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0170316_13	PHROG	phrog_18110	NA	unknown function
UHGV-0170316_13	UniRef90	UniRef90_A0A1C6HKX4	Phage minor structural protein, N-terminal region	NA
UHGV-0170316_13	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-0170316_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0170316_13	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0170316_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0170316_13	COG	COG4926	Phage-related protein	NA
UHGV-0170316_13	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0170316_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0170316_14	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0170316_14	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0170316_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0170316_14	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0170316_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0170316_15	UniRef90	UniRef90_A0A1G4WU66	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0170316_15	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0170316_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0170316_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0170316_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0170316_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0170316_17	PHROG	phrog_706	NA	unknown function
UHGV-0170316_17	UniRef90	UniRef90_UPI0006C2D934	bacteriophage Gp15 family protein	NA
UHGV-0170316_17	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0170316_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0170316_17	Structural annotation	PF06854	NA	NA
UHGV-0170316_18	PHROG	phrog_4450	NA	unknown function
UHGV-0170316_18	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0170316_18	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0170316_18	Pfam	PF20378	NA	DUF6673
UHGV-0170316_18	Structural annotation	PF20378	NA	NA
UHGV-0170316_19	PHROG	phrog_3099	NA	unknown function
UHGV-0170316_19	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0170316_19	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0170316_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0170316_20	PHROG	phrog_3266	tail completion	connector
UHGV-0170316_20	UniRef90	UniRef90_UPI001178914F	chloramphenicol resistance protein	NA
UHGV-0170316_20	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0170316_20	Structural annotation	PF12691	NA	NA
UHGV-0170316_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0170316_21	UniRef90	UniRef90_UPI0005439C25	minor capsid protein	NA
UHGV-0170316_21	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0170316_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0170316_21	Structural annotation	PF11114	NA	NA
UHGV-0170316_22	PHROG	phrog_3366	NA	unknown function
UHGV-0170316_22	Pfam	PF20536	NA	DUF6751
UHGV-0170316_22	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0170316_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0170316_23	eggNOG-mapper	663278.Ethha_0495	NA	NA
UHGV-0170316_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-0170316_24	UniRef90	UniRef90_A0A5B6P485	N4-gp56 family major capsid protein	NA
UHGV-0170316_24	eggNOG-mapper	1211814.CAPG01000027_gene1311	NA	NA
UHGV-0170316_24	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0170316_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0170316_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0170316_25	UniRef90	UniRef90_UPI000A271E08	phage scaffolding protein	NA
UHGV-0170316_25	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0170316_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0170316_25	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0170316_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0170316_27	UniRef90	UniRef90_A0A1C6H425	Phage minor capsid protein 2	NA
UHGV-0170316_27	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0170316_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0170316_27	COG	COG2369	NA	NA
UHGV-0170316_27	Structural annotation	PF06152	NA	NA
UHGV-0170316_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0170316_28	UniRef90	UniRef90_UPI001D0FF9EC	phage portal protein	NA
UHGV-0170316_28	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0170316_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0170316_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0170316_29	PHROG	phrog_10250	NA	unknown function
UHGV-0170316_29	UniRef90	UniRef90_A0A6A8VHC1	PBSX family phage terminase large subunit	NA
UHGV-0170316_29	eggNOG-mapper	1384066.JAGT01000001_gene2140	Phage terminase, large subunit, PBSX family	NA
UHGV-0170316_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0170316_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0170316_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0170316_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0170316_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0170316_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0170316_30	UniRef90	UniRef90_UPI001DE3E585	terminase small subunit	NA
UHGV-0170316_30	eggNOG-mapper	1415774.U728_2926	Terminase Small Subunit	NA
UHGV-0170316_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0170316_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0170316_31	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0170316_31	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0170316_31	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0170316_33	UniRef90	UniRef90_R7EVG2	Thymidylate synthase ThyX	NA
UHGV-0170316_33	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-0170316_33	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0170316_33	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0170316_35	PHROG	phrog_924	NA	unknown function
UHGV-0170316_35	UniRef90	UniRef90_A0A413ITX0	NA	NA
UHGV-0170316_35	Pfam	PF04448	NA	DUF551
UHGV-0170316_35	Structural annotation	NF041588	NA	NA
UHGV-0170316_37	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0170316_37	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0170316_37	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0170316_37	eggNOG-mapper	641107.CDLVIII_5566	Belongs to the dCTP deaminase family	NA
UHGV-0170316_37	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0170316_37	COG	COG0717	dCTP deaminase	NA
UHGV-0170316_37	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0170316_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-0170316_38	UniRef90	UniRef90_A0A413EEF9	NA	NA
UHGV-0170316_38	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0170316_38	Pfam	PF11753	NA	DUF3310
UHGV-0170316_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0170316_39	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0170316_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170316_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0170316_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0170316_42	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0170316_42	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0170316_42	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0170316_42	Pfam	PF06048	NA	DUF927
UHGV-0170316_42	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0170316_42	COG	COG5519	NA	NA
UHGV-0170316_42	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0170316_43	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0170316_43	PHROG	phrog_11992	NA	unknown function
UHGV-0170316_43	UniRef90	UniRef90_A0A2U1BEF8	CHC2-type zinc finger protein	NA
UHGV-0170316_43	eggNOG-mapper	1514668.JOOA01000002_gene2050	CHC2 zinc finger domain protein	NA
UHGV-0170316_43	PADLOC	drt-UG29	DRT	DRT
UHGV-0170316_43	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0170316_43	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0170316_43	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0170316_44	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0170316_44	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0170316_44	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0170316_44	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0170316_44	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0170316_44	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0170316_45	PHROG	phrog_18107	NA	unknown function
UHGV-0170316_45	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0170316_45	Structural annotation	PF05037	NA	NA
UHGV-0170316_46	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170316_46	UniRef90	UniRef90_A0A316RHU5	ATP-binding protein	NA
UHGV-0170316_46	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0170316_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-0170316_46	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0170316_48	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0170316_48	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0170316_48	UniRef90	UniRef90_UPI000E09A8FA	MT-A70 family methyltransferase	NA
UHGV-0170316_48	eggNOG-mapper	1462527.CCDM010000006_gene4447	Belongs to the MT-A70-like family	NA
UHGV-0170316_48	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0170316_48	Pfam	PF05063	MT-A70	MT-A70
UHGV-0170316_48	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0170316_48	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0170316_50	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0170316_50	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0170316_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0170316_50	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0170316_51	PHROG	phrog_585	NA	unknown function
UHGV-0170316_51	UniRef90	UniRef90_UPI0003B71B6D	NA	NA
UHGV-0170316_51	eggNOG-mapper	1121105.ATXL01000006_gene1354	NA	NA
UHGV-0170316_51	Pfam	PF10711	NA	DUF2513
UHGV-0170316_51	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0170316_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170316_53	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0170316_53	UniRef90	UniRef90_W6RW08	Phage antirepressor protein	NA
UHGV-0170316_53	eggNOG-mapper	935837.JAEK01000027_gene1661	AntA/AntB antirepressor	NA
UHGV-0170316_53	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0170316_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170316_53	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0170316_53	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0170316_55	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0170316_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0170316_55	UniRef90	UniRef90_A0A252F720	HTH cro/C1-type domain-containing protein	NA
UHGV-0170316_55	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0170316_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170316_55	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0170316_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170316_55	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0170316_56	PHROG	phrog_806	NA	unknown function
UHGV-0170316_56	UniRef90	UniRef90_UPI00195A6F18	NA	NA
UHGV-0170316_56	Pfam	PF16729	NA	DUF5067
UHGV-0170316_57	KOfam	K14059	int; integrase	NA
UHGV-0170316_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0170316_57	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0170316_57	eggNOG-mapper	997350.HMPREF9129_2147	Phage integrase family	NA
UHGV-0170316_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0170316_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170316_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170316_57	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA