UHGV-0170381

Genome information

Genome length 50,370 bps

CDS count 86

Completeness 85.43% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170381
vOTU ID	vOTU-028467
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_508180
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.78
Jumbo phage	No

Genome content
Genome length	50,370 bps
GC content	38.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	88.25%
Average CDS length	519.17 bps
tRNA count	5
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170381_1	KOfam	K14059	int; integrase	NA
UHGV-0170381_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0170381_1	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0170381_1	eggNOG-mapper	411489.CLOL250_01458	Belongs to the 'phage' integrase family	NA
UHGV-0170381_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0170381_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170381_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170381_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0170381_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0170381_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0170381_2	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0170381_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0170381_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0170381_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0170381_2	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0170381_3	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0170381_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0170381_4	PHROG	phrog_17284	NA	unknown function
UHGV-0170381_4	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0170381_4	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0170381_4	PADLOC	MTase_II_00147	Type II methyltransferase	RM
UHGV-0170381_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0170381_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0170381_7	KOfam	K00953	FLAD1; FAD synthetase [EC:2.7.7.2]	NA
UHGV-0170381_7	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0170381_7	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0170381_7	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0170381_7	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0170381_7	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0170381_16	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0170381_17	PHROG	phrog_21026	NA	unknown function
UHGV-0170381_21	PHROG	phrog_9804	NA	unknown function
UHGV-0170381_21	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0170381_21	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0170381_21	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0170381_21	Structural annotation	PF11417	NA	NA
UHGV-0170381_22	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0170381_22	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0170381_22	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0170381_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170381_23	Structural annotation	PF17388	NA	NA
UHGV-0170381_27	PHROG	phrog_19106	NA	unknown function
UHGV-0170381_27	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0170381_27	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0170381_27	Structural annotation	TIGR01453	NA	NA
UHGV-0170381_28	PHROG	phrog_20593	NA	unknown function
UHGV-0170381_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170381_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170381_29	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0170381_29	eggNOG-mapper	500632.CLONEX_04019	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0170381_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170381_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170381_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170381_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170381_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0170381_31	PHROG	phrog_1578	NA	unknown function
UHGV-0170381_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0170381_33	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0170381_33	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0170381_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0170381_33	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0170381_34	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0170381_34	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-0170381_34	eggNOG-mapper	443254.Marpi_0302	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0170381_34	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0170381_35	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170381_35	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-0170381_35	eggNOG-mapper	1500386.A0A060AFF3_9CAUD	HNH endonuclease	NA
UHGV-0170381_35	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0170381_35	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0170381_35	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0170381_35	Structural annotation	PF13392, PF07463	NA	NA
UHGV-0170381_36	PHROG	phrog_25456	NA	unknown function
UHGV-0170381_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0170381_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170381_37	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0170381_37	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0170381_37	Pfam	PF03837	RecT family	RecT
UHGV-0170381_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0170381_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0170381_37	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0170381_40	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0170381_40	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170381_40	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0170381_40	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0170381_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0170381_40	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0170381_43	UniRef90	UniRef90_A0A1L8RDA1	LysM domain-containing protein	NA
UHGV-0170381_43	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0170381_43	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0170381_44	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0170381_44	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0170381_44	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0170381_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170381_44	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0170381_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0170381_44	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0170381_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170381_45	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0170381_45	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0170381_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0170381_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170381_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0170381_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0170381_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170381_46	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0170381_46	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0170381_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170381_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170381_46	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0170381_47	PHROG	phrog_3845	NA	unknown function
UHGV-0170381_47	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0170381_49	PHROG	phrog_1419	tail protein	tail
UHGV-0170381_49	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0170381_50	PHROG	phrog_6616	tail protein	tail
UHGV-0170381_50	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0170381_50	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0170381_50	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0170381_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0170381_51	PHROG	phrog_1194	NA	unknown function
UHGV-0170381_51	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0170381_51	Pfam	PF20458	NA	DUF6711
UHGV-0170381_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0170381_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0170381_52	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-0170381_52	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0170381_52	COG	COG1511	NA	NA
UHGV-0170381_53	KOfam	K07486	K07486; transposase	NA
UHGV-0170381_53	PHROG	phrog_2199	transposase	integration and excision
UHGV-0170381_53	UniRef90	UniRef90_R9IQ34	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-0170381_53	eggNOG-mapper	742765.HMPREF9457_03802	Transposase IS116/IS110/IS902 family	NA
UHGV-0170381_53	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0170381_53	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0170381_53	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0170381_53	COG	COG3547	Transposase	NA
UHGV-0170381_54	KOfam	K07273	acm; lysozyme	NA
UHGV-0170381_54	PHROG	phrog_291	endolysin	lysis
UHGV-0170381_54	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0170381_54	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0170381_54	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0170381_54	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0170381_54	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0170381_57	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0170381_57	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0170381_58	Structural annotation	PF05657	NA	NA
UHGV-0170381_59	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0170381_59	AcrCatalog	cluster_24841	NA	NA
UHGV-0170381_60	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0170381_60	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0170381_61	PHROG	phrog_1129	holin	lysis
UHGV-0170381_61	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0170381_61	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0170381_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0170381_61	Structural annotation	PF06946	NA	NA
UHGV-0170381_62	PHROG	phrog_4105	NA	unknown function
UHGV-0170381_62	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0170381_63	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0170381_64	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0170381_64	Structural annotation	PF21169	NA	NA
UHGV-0170381_65	PHROG	phrog_29	major head protein	head and packaging
UHGV-0170381_65	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0170381_65	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0170381_65	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0170381_65	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0170381_66	PHROG	phrog_909	major head protein	head and packaging
UHGV-0170381_66	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0170381_67	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0170381_68	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0170381_68	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0170381_68	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0170381_68	COG	COG2369	NA	NA
UHGV-0170381_68	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0170381_69	PHROG	phrog_64	portal protein	head and packaging
UHGV-0170381_69	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0170381_69	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0170381_69	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0170381_69	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0170381_70	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170381_70	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0170381_70	Structural annotation	PF02996	NA	NA
UHGV-0170381_71	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0170381_71	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0170381_71	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0170381_71	COG	COG5410	NA	NA
UHGV-0170381_71	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0170381_72	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0170381_72	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0170381_72	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0170381_73	PHROG	phrog_2316	NA	unknown function
UHGV-0170381_73	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0170381_73	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0170381_73	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0170381_74	PHROG	phrog_1233	NA	unknown function
UHGV-0170381_74	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0170381_74	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0170381_74	Structural annotation	PF13058	NA	NA
UHGV-0170381_77	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0170381_80	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0170381_80	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0170381_82	PHROG	phrog_22444	NA	unknown function
UHGV-0170381_82	UniRef90	UniRef90_UPI001CC2634F	helix-turn-helix domain-containing protein	NA
UHGV-0170381_82	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-0170381_82	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170381_82	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0170381_84	PHROG	phrog_236	nucleotide kinase	other
UHGV-0170381_84	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0170381_84	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0170381_84	Pfam	PF11753	NA	DUF3310
UHGV-0170381_84	Structural annotation	PF11753	NA	NA