UHGV-0170383

Genome information

Genome length 33,117 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170383
vOTU ID	vOTU-010842
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_527539
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.59
Jumbo phage	No

Genome content
Genome length	33,117 bps
GC content	52.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.79%
Average CDS length	598.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170383_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0170383_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170383_1	UniRef90	UniRef90_A0A1Q6RIM0	Transcriptional regulator	NA
UHGV-0170383_1	eggNOG-mapper	693746.OBV_30760	DNA-binding helix-turn-helix protein	NA
UHGV-0170383_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170383_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0170383_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0170383_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0170383_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170383_2	UniRef90	UniRef90_R6I554	XRE family transcriptional regulator	NA
UHGV-0170383_2	eggNOG-mapper	985665.HPL003_12740	transcriptional	NA
UHGV-0170383_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170383_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0170383_2	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0170383_3	KOfam	K01501	E3.5.5.1; nitrilase [EC:3.5.5.1]	NA
UHGV-0170383_3	UniRef90	UniRef90_A0A1Y4RHT6	Nitrilase	NA
UHGV-0170383_3	eggNOG-mapper	1262915.BN574_00969	Carbon-nitrogen hydrolase	NA
UHGV-0170383_3	Pfam	PF00795	Carbon-nitrogen hydrolase	CN_hydrolase
UHGV-0170383_3	COG	COG0388	Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate	NA
UHGV-0170383_4	UniRef90	UniRef90_A0A7X9GLH6	NA	NA
UHGV-0170383_4	eggNOG-mapper	720554.Clocl_0718	NA	NA
UHGV-0170383_4	Pfam	PF09862	NA	DUF2089
UHGV-0170383_4	COG	COG3877	NA	NA
UHGV-0170383_5	eggNOG-mapper	720554.Clocl_0719	NA	NA
UHGV-0170383_6	KOfam	K14059	int; integrase	NA
UHGV-0170383_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0170383_6	UniRef90	UniRef90_A0A1M5ZI50	Site-specific recombinase XerD	NA
UHGV-0170383_6	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0170383_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170383_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170383_6	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0170383_8	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0170383_8	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0170383_8	Structural annotation	PF18899, NF007603, COG3586	NA	NA
UHGV-0170383_9	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0170383_9	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0170383_9	UniRef90	UniRef90_UPI00187656F4	3'-5' exoribonuclease	NA
UHGV-0170383_9	eggNOG-mapper	748727.CLJU_c36230	3' exoribonuclease, RNase T-like	NA
UHGV-0170383_9	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0170383_9	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0170383_9	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0170383_9	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0170383_9	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0170383_10	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0170383_10	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0170383_10	UniRef90	UniRef90_A0A3D0EC75	Exonuclease	NA
UHGV-0170383_10	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0170383_10	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0170383_10	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0170383_10	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0170383_10	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0170383_10	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0170383_10	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0170383_11	eggNOG-mapper	1280689.AUJC01000006_gene2791	breast cancer carboxy-terminal domain	NA
UHGV-0170383_11	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0170383_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0170383_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0170383_12	UniRef90	UniRef90_A0A3D1VDF3	LexA family transcriptional regulator	NA
UHGV-0170383_12	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0170383_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170383_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0170383_12	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170383_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0170383_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170383_16	UniRef90	UniRef90_A0A1Y4KW25	HTH cro/C1-type domain-containing protein	NA
UHGV-0170383_16	eggNOG-mapper	1123312.KB904584_gene731	Transcriptional	NA
UHGV-0170383_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170383_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0170383_16	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0170383_17	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0170383_17	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0170383_17	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0170383_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170383_17	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0170383_17	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0170383_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0170383_19	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0170383_19	eggNOG-mapper	411467.BACCAP_01805	COG NOG34358 non supervised orthologous group	NA
UHGV-0170383_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0170383_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170383_19	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0170383_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0170383_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0170383_20	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0170383_20	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0170383_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0170383_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0170383_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0170383_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0170383_21	Structural annotation	PF09465, COG5475	NA	NA
UHGV-0170383_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0170383_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0170383_22	UniRef90	UniRef90_A0A3D1VAU9	ParA family protein	NA
UHGV-0170383_22	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0170383_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0170383_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0170383_22	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0170383_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0170383_23	PHROG	phrog_27290	NA	unknown function
UHGV-0170383_23	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0170383_23	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0170383_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0170383_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0170383_23	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0170383_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0170383_26	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0170383_26	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0170383_27	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0170383_27	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0170383_27	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0170383_27	Structural annotation	PF14205	NA	NA
UHGV-0170383_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170383_28	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0170383_28	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0170383_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170383_28	Structural annotation	TIGR02646	NA	NA
UHGV-0170383_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0170383_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0170383_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0170383_30	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0170383_30	eggNOG-mapper	913865.DOT_5636	Phage Terminase	NA
UHGV-0170383_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0170383_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0170383_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0170383_30	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0170383_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0170383_31	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0170383_31	eggNOG-mapper	358681.BBR47_29150	Phage portal protein	NA
UHGV-0170383_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0170383_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0170383_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0170383_31	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0170383_32	KOfam	K06904	NA	NA
UHGV-0170383_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0170383_32	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0170383_32	eggNOG-mapper	1123298.KB904077_gene458	Caudovirus prohead serine protease	NA
UHGV-0170383_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0170383_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0170383_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0170383_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0170383_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0170383_33	UniRef90	UniRef90_A0A7C6PQI0	Phage major capsid protein	NA
UHGV-0170383_33	eggNOG-mapper	913865.DOT_5633	phage major capsid protein, HK97 family	NA
UHGV-0170383_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0170383_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0170383_33	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0170383_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0170383_35	PHROG	phrog_19734	NA	unknown function
UHGV-0170383_35	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0170383_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0170383_36	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0170383_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0170383_37	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0170383_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0170383_37	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0170383_38	PHROG	phrog_88	major tail protein	tail
UHGV-0170383_38	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0170383_38	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0170383_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0170383_40	PHROG	phrog_23464	NA	unknown function
UHGV-0170383_40	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-0170383_40	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0170383_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0170383_41	UniRef90	UniRef90_A0A7G9T4R1	Phage baseplate protein	NA
UHGV-0170383_41	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0170383_42	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0170383_45	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0170383_45	Structural annotation	PF13306	NA	NA
UHGV-0170383_47	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0170383_47	PHROG	phrog_27545	NA	unknown function
UHGV-0170383_47	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0170383_47	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0170383_47	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0170383_47	Structural annotation	PF14600	NA	NA
UHGV-0170383_48	PHROG	phrog_9589	endolysin	lysis
UHGV-0170383_48	UniRef90	UniRef90_UPI000F53D9B7	CHAP domain-containing protein	NA
UHGV-0170383_48	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0170383_48	Pfam	PF05257	CHAP domain	CHAP
UHGV-0170383_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0170383_48	Structural annotation	TIGR02594, COG3738	NA	NA
UHGV-0170383_49	PHROG	phrog_1863	NA	unknown function
UHGV-0170383_49	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0170383_50	PHROG	phrog_1129	holin	lysis
UHGV-0170383_50	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-0170383_50	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0170383_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0170383_50	Structural annotation	PF06946	NA	NA
UHGV-0170383_51	UniRef90	UniRef90_A0A3D6BJC0	BIG2 domain-containing protein	NA