UHGV-0170404

Genome information

vOTU vOTU-019707

Genome length 35,787 bps

CDS count 56

Completeness 88.62% (medium-quality)

geNomad score 0.9105

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170404
vOTU ID	vOTU-019707
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541823
BioSample	SAMN06328419
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9105
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.56
Jumbo phage	No

Genome content
Genome length	35,787 bps
GC content	49.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.09%
Average CDS length	585.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170404_1	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0170404_1	PHROG	phrog_894	endolysin	lysis
UHGV-0170404_1	UniRef90	UniRef90_A0A3D4GBZ5	Peptidase_M15_3 domain-containing protein	NA
UHGV-0170404_1	eggNOG-mapper	572547.Amico_1100	Peptidase M15	NA
UHGV-0170404_1	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0170404_1	COG	COG3108	NA	NA
UHGV-0170404_1	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0170404_2	PHROG	phrog_785	holin	lysis
UHGV-0170404_2	UniRef90	UniRef90_UPI0007A0CC65	phage holin family protein	NA
UHGV-0170404_2	eggNOG-mapper	742823.HMPREF9465_00919	LydA holin phage, holin superfamily III	NA
UHGV-0170404_2	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0170404_4	Structural annotation	PF17065, MF_01410, NF040827, COG3615	NA	NA
UHGV-0170404_5	Structural annotation	PF17065, TIGR03511, COG1843	NA	NA
UHGV-0170404_6	Structural annotation	PF00386, NF033147, COG4935	NA	NA
UHGV-0170404_7	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0170404_7	UniRef90	UniRef90_R5EDB9	Putative cell wall protein DAN4	NA
UHGV-0170404_7	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-0170404_7	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0170404_7	Structural annotation	PF16778	NA	NA
UHGV-0170404_8	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0170404_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0170404_9	PHROG	phrog_19618	tail collar protein	tail
UHGV-0170404_9	UniRef90	UniRef90_A0A6L6YMH3	Collar domain-containing protein	NA
UHGV-0170404_9	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0170404_9	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0170404_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0170404_9	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0170404_10	PHROG	phrog_203	tail protein	tail
UHGV-0170404_10	UniRef90	UniRef90_A0A6L6YM70	NA	NA
UHGV-0170404_10	eggNOG-mapper	1268068.PG5_42230	NA	NA
UHGV-0170404_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0170404_10	COG	COG3778	NA	NA
UHGV-0170404_10	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0170404_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0170404_11	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0170404_11	eggNOG-mapper	690850.Desaf_0706	Baseplate J-like protein	NA
UHGV-0170404_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0170404_11	COG	COG3299	NA	NA
UHGV-0170404_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0170404_12	PHROG	phrog_180	tail protein	tail
UHGV-0170404_12	UniRef90	UniRef90_A0A8B6X3R6	phage GP46 family protein	NA
UHGV-0170404_12	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-0170404_12	Pfam	PF07409	NA	GP46
UHGV-0170404_12	COG	COG4381	NA	NA
UHGV-0170404_12	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0170404_13	UniRef90	UniRef90_A0A3D3SHB9	Baseplate assembly protein (Fragment)	NA
UHGV-0170404_13	eggNOG-mapper	42565.FP66_09895	Bacteriophage Mu Gp45 protein	NA
UHGV-0170404_13	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0170404_13	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0170404_13	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0170404_13	COG	COG4384	NA	NA
UHGV-0170404_13	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0170404_15	PHROG	phrog_177	tail protein	tail
UHGV-0170404_15	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0170404_15	eggNOG-mapper	157783.LK03_15460	tail protein	NA
UHGV-0170404_15	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0170404_15	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0170404_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0170404_17	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0170404_17	UniRef90	UniRef90_A0A6L6YM41	DNA_circ_N domain-containing protein (Fragment)	NA
UHGV-0170404_17	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0170404_17	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0170404_17	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0170404_17	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0170404_18	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0170404_18	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0170404_18	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0170404_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0170404_18	COG	COG5412	Phage-related protein	NA
UHGV-0170404_18	Structural annotation	TIGR01760	NA	NA
UHGV-0170404_20	PHROG	phrog_185	tail tube protein	tail
UHGV-0170404_20	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0170404_20	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0170404_20	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0170404_20	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0170404_21	PHROG	phrog_165	tail sheath	tail
UHGV-0170404_21	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0170404_21	eggNOG-mapper	273526.SMDB11_2601	Phage tail sheath C-terminal domain	NA
UHGV-0170404_21	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0170404_21	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0170404_21	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0170404_21	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0170404_22	PHROG	phrog_209	portal protein	head and packaging
UHGV-0170404_22	UniRef90	UniRef90_A0A087KRM1	Putative transposon protein	NA
UHGV-0170404_22	eggNOG-mapper	273526.SMDB11_2602	NA	NA
UHGV-0170404_22	Structural annotation	PF09646	NA	NA
UHGV-0170404_23	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0170404_23	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-0170404_23	Structural annotation	TIGR01725	NA	NA
UHGV-0170404_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0170404_24	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0170404_24	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0170404_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0170404_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0170404_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0170404_25	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-0170404_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0170404_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0170404_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0170404_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0170404_26	UniRef90	UniRef90_A0A6L6YL65	Phage major capsid protein	NA
UHGV-0170404_26	eggNOG-mapper	279238.Saro_0649	capsid protein	NA
UHGV-0170404_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0170404_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0170404_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0170404_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0170404_27	KOfam	K06904	NA	NA
UHGV-0170404_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0170404_27	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0170404_27	eggNOG-mapper	1147158.K7PKL4_9CAUD	peptidase activity	NA
UHGV-0170404_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0170404_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0170404_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0170404_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0170404_28	UniRef90	UniRef90_A0A6L6YIJ9	Phage portal protein	NA
UHGV-0170404_28	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0170404_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0170404_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0170404_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0170404_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0170404_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0170404_29	UniRef90	UniRef90_A0A6L6YIT6	Terminase large subunit	NA
UHGV-0170404_29	eggNOG-mapper	1485544.JQKP01000008_gene1675	Terminase	NA
UHGV-0170404_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0170404_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0170404_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0170404_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0170404_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0170404_30	UniRef90	UniRef90_A0A2Z6GBX9	Terminase, small subunit	NA
UHGV-0170404_30	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0170404_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0170404_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0170404_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0170404_31	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170404_31	UniRef90	UniRef90_A0A3D3SJH3	HNH endonuclease	NA
UHGV-0170404_31	eggNOG-mapper	1501230.ET33_21195	HNH nucleases	NA
UHGV-0170404_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0170404_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170404_32	PHROG	phrog_33502	NA	unknown function
UHGV-0170404_32	UniRef90	UniRef90_A0A2S5T8J3	XRE family transcriptional regulator	NA
UHGV-0170404_32	eggNOG-mapper	1094755.MCO_01006	Protein conserved in bacteria	NA
UHGV-0170404_32	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0170404_32	COG	COG1426	NA	NA
UHGV-0170404_32	Structural annotation	PF13560, MF_00535, NF041951, COG1513	NA	NA
UHGV-0170404_33	UniRef90	UniRef90_J2Q0L5	Putative Zn peptidase	NA
UHGV-0170404_33	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0170404_33	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0170404_33	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-0170404_37	Structural annotation	PF08281, MF_00245, NF007225, COG1595	NA	NA
UHGV-0170404_39	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0170404_39	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0170404_39	UniRef90	UniRef90_A0A6L6YKY2	NA	NA
UHGV-0170404_39	eggNOG-mapper	765910.MARPU_09580	Phage plasmid primase P4 family	NA
UHGV-0170404_39	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0170404_39	Pfam	PF19263	NA	DUF5906
UHGV-0170404_39	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0170404_39	Structural annotation	PF05272, PF03288, MF_04000, NF011296, TIGR00646, COG4643, COG3378	NA	NA
UHGV-0170404_43	UniRef90	UniRef90_UPI001C236155	Cro/Cl family transcriptional regulator	NA
UHGV-0170404_43	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0170404_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0170404_44	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0170404_44	UniRef90	UniRef90_A0A3D3SJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0170404_44	eggNOG-mapper	257310.BB1678	Peptidase S24-like	NA
UHGV-0170404_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170404_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0170404_44	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0170404_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170404_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170404_51	UniRef90	UniRef90_A0A3D3SFE9	Single-stranded DNA-binding protein	NA
UHGV-0170404_51	eggNOG-mapper	1121939.L861_08395	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0170404_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170404_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170404_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170404_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170404_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0170404_53	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0170404_53	UniRef90	UniRef90_D9Y6B9	Transcriptional regulator, AlpA family	NA
UHGV-0170404_53	eggNOG-mapper	395494.Galf_1836	Transcriptional regulator	NA
UHGV-0170404_53	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0170404_53	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0170404_53	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0170404_54	KOfam	K07403	nfeD; membrane-bound serine protease (ClpP class)	NA
UHGV-0170404_54	PHROG	phrog_11747	NA	unknown function
UHGV-0170404_54	UniRef90	UniRef90_UPI0013F65BB6	S49 family peptidase	NA
UHGV-0170404_54	eggNOG-mapper	404380.Gbem_3471	Serine dehydrogenase proteinase	NA
UHGV-0170404_54	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-0170404_54	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0170404_54	Structural annotation	PF01972, MF_00444, TIGR00706, COG0740	NA	NA
UHGV-0170404_56	KOfam	K14059	int; integrase	NA
UHGV-0170404_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0170404_56	UniRef90	UniRef90_D9Y6B8	Arm-DNA-bind_3 domain-containing protein	NA
UHGV-0170404_56	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-0170404_56	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0170404_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170404_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA