UHGV-0170427

Genome information

Genome length 44,154 bps

CDS count 53

Completeness 95.23% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170427
vOTU ID	vOTU-010832
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_514921
BioSample	SAMN06164556
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.11
Jumbo phage	No

Genome content
Genome length	44,154 bps
GC content	52.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.28%
Average CDS length	739.25 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170427_2	Structural annotation	PF18350	NA	NA
UHGV-0170427_4	PHROG	phrog_874	NA	unknown function
UHGV-0170427_4	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0170427_4	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0170427_8	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0170427_8	UniRef90	UniRef90_A0A191ZDI3	Putative terminase small subunit	NA
UHGV-0170427_8	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0170427_8	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0170427_8	Structural annotation	PF16677	NA	NA
UHGV-0170427_9	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0170427_9	UniRef90	UniRef90_UPI001C3B1480	Phage terminase large subunit	NA
UHGV-0170427_9	eggNOG-mapper	445970.ALIPUT_00048	domain protein	NA
UHGV-0170427_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0170427_9	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0170427_9	COG	COG5410	NA	NA
UHGV-0170427_9	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0170427_10	PHROG	phrog_8193	major head protein	head and packaging
UHGV-0170427_10	UniRef90	UniRef90_I6S2L8	Putative tail protein	NA
UHGV-0170427_10	eggNOG-mapper	1176422.I6S2L8_9CAUD	NA	NA
UHGV-0170427_10	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0170427_11	PHROG	phrog_7376	portal protein	head and packaging
UHGV-0170427_11	UniRef90	UniRef90_A0A7U3MXY7	Portal protein	NA
UHGV-0170427_11	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-0170427_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0170427_13	PHROG	phrog_7970	virion structural protein	head and packaging
UHGV-0170427_13	UniRef90	UniRef90_A0A7U3MYE1	Putative capsid associated protein	NA
UHGV-0170427_13	eggNOG-mapper	1176422.I6S6X7_9CAUD	NA	NA
UHGV-0170427_13	Structural annotation	PF21662	NA	NA
UHGV-0170427_14	PHROG	phrog_7231	virion structural protein	head and packaging
UHGV-0170427_14	UniRef90	UniRef90_B5TRC7	MP1	NA
UHGV-0170427_14	eggNOG-mapper	99179.B5TRC7_9CAUD	NA	NA
UHGV-0170427_14	Structural annotation	PF05065, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0170427_15	PHROG	phrog_8189	NA	unknown function
UHGV-0170427_15	eggNOG-mapper	1105171.H2A0E2_9CAUD	NA	NA
UHGV-0170427_15	Structural annotation	PF02839, NF041539	NA	NA
UHGV-0170427_16	PHROG	phrog_6195	tail protein	tail
UHGV-0170427_16	UniRef90	UniRef90_A0A7U3MW91	Virion morphogenesis protein	NA
UHGV-0170427_16	eggNOG-mapper	1121101.HMPREF1532_02604	NA	NA
UHGV-0170427_16	Structural annotation	PF05069	NA	NA
UHGV-0170427_17	PHROG	phrog_8145	NA	unknown function
UHGV-0170427_17	eggNOG-mapper	99179.B5TRD0_9CAUD	NA	NA
UHGV-0170427_17	Structural annotation	PF08873	NA	NA
UHGV-0170427_19	PHROG	phrog_8914	virion structural protein	head and packaging
UHGV-0170427_19	UniRef90	UniRef90_A0A088C4G9	Tail assembly chaperone	NA
UHGV-0170427_19	eggNOG-mapper	99179.B5TR86_9CAUD	NA	NA
UHGV-0170427_20	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0170427_20	PHROG	phrog_20660	tail length tape measure protein	tail
UHGV-0170427_20	UniRef90	UniRef90_H2A0C7	Putative DNA segregation protein	NA
UHGV-0170427_20	eggNOG-mapper	1105171.H2A0C7_9CAUD	NA	NA
UHGV-0170427_21	PHROG	phrog_19383	NA	unknown function
UHGV-0170427_21	eggNOG-mapper	1105171.H2A0C6_9CAUD	NA	NA
UHGV-0170427_21	Structural annotation	PF17994, NF033675	NA	NA
UHGV-0170427_22	KOfam	K13735	yeeJ; adhesin/invasin	NA
UHGV-0170427_22	PHROG	phrog_35885	NA	unknown function
UHGV-0170427_22	UniRef90	UniRef90_UPI000AF88608	carboxypeptidase-like regulatory domain-containing protein	NA
UHGV-0170427_22	eggNOG-mapper	1176422.I6S2N2_9CAUD	NA	NA
UHGV-0170427_22	Pfam	PF08308	PEGA domain	PEGA
UHGV-0170427_22	Pfam	PF13115	YtkA-like	YtkA
UHGV-0170427_25	Pfam	PF07196	Flagellin hook IN motif	Flagellin_IN
UHGV-0170427_25	Structural annotation	PF07603	NA	NA
UHGV-0170427_26	Structural annotation	PF02185	NA	NA
UHGV-0170427_29	PHROG	phrog_873	endolysin	head and packaging
UHGV-0170427_29	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0170427_29	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0170427_30	Structural annotation	PF20647	NA	NA
UHGV-0170427_31	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0170427_31	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0170427_31	UniRef90	UniRef90_UPI00050A2096	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0170427_31	eggNOG-mapper	575590.HMPREF0156_00159	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0170427_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0170427_31	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0170427_32	UniRef90	UniRef90_UPI00050A273C	helix-turn-helix transcriptional regulator	NA
UHGV-0170427_32	eggNOG-mapper	1121887.AUDK01000033_gene1451	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0170427_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0170427_32	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0170427_33	KOfam	K14059	int; integrase	NA
UHGV-0170427_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0170427_33	UniRef90	UniRef90_UPI0006919286	site-specific integrase	NA
UHGV-0170427_33	eggNOG-mapper	1121100.JCM6294_508	Phage integrase SAM-like domain	NA
UHGV-0170427_33	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0170427_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0170427_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170427_33	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0170427_34	UniRef90	UniRef90_UPI0003A29ADC	Arm DNA-binding domain-containing protein	NA
UHGV-0170427_34	eggNOG-mapper	679935.Alfi_0856	Belongs to the 'phage' integrase family	NA
UHGV-0170427_34	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0170427_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170427_35	PHROG	phrog_2384	NA	unknown function
UHGV-0170427_35	UniRef90	UniRef90_A0A6G7J8A0	P63C domain-containing protein	NA
UHGV-0170427_35	eggNOG-mapper	883.DvMF_1646	P63C domain	NA
UHGV-0170427_35	Pfam	PF10546	P63C domain	P63C
UHGV-0170427_35	Structural annotation	PF10546	NA	NA
UHGV-0170427_36	UniRef90	UniRef90_UPI001CF928B5	NA	NA
UHGV-0170427_36	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0170427_36	Structural annotation	PF04212	NA	NA
UHGV-0170427_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0170427_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0170427_37	UniRef90	UniRef90_A0A4Y8L5E7	Peptidase_S24 domain-containing protein	NA
UHGV-0170427_37	eggNOG-mapper	667015.Bacsa_2257	Transcriptional regulator	NA
UHGV-0170427_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0170427_37	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0170427_37	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0170427_38	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-0170427_41	Structural annotation	PF14084	NA	NA
UHGV-0170427_44	PHROG	phrog_14584	NA	unknown function
UHGV-0170427_44	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-0170427_45	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0170427_45	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0170427_45	UniRef90	UniRef90_UPI0018A94F46	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0170427_45	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-0170427_45	Pfam	PF12684	NA	DUF3799
UHGV-0170427_45	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0170427_47	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170427_47	UniRef90	UniRef90_UPI0018AC7931	recombination protein NinG	NA
UHGV-0170427_47	eggNOG-mapper	762982.HMPREF9442_00543	NA	NA
UHGV-0170427_47	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0170427_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170427_47	Structural annotation	PF05766	NA	NA
UHGV-0170427_48	PHROG	phrog_26490	NA	unknown function
UHGV-0170427_48	eggNOG-mapper	1268240.ATFI01000008_gene2557	NA	NA
UHGV-0170427_49	PHROG	phrog_16304	NA	unknown function
UHGV-0170427_49	UniRef90	UniRef90_UPI001898327E	NA	NA
UHGV-0170427_49	eggNOG-mapper	694427.Palpr_2953	NA	NA
UHGV-0170427_49	Pfam	PF19808	NA	DUF6291
UHGV-0170427_50	PHROG	phrog_15937	NA	unknown function
UHGV-0170427_50	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-0170427_51	KOfam	K24451	zim; modification methylase	NA
UHGV-0170427_51	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0170427_51	UniRef90	UniRef90_A0A5J4SU36	Modification methylase HindIII	NA
UHGV-0170427_51	eggNOG-mapper	585502.HMPREF0645_2609	DNA methylase	NA
UHGV-0170427_51	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0170427_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0170427_51	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0170427_51	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA