UHGV-0170448

Genome information

Genome length 37,327 bps

CDS count 60

Completeness 89.93% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170448
vOTU ID	vOTU-022406
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_521026
BioSample	SAMN06164683
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.91
Jumbo phage	No

Genome content
Genome length	37,327 bps
GC content	46.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.15%
Average CDS length	585.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170448_1	Structural annotation	PF16116	NA	NA
UHGV-0170448_3	PHROG	phrog_13589	NA	unknown function
UHGV-0170448_3	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0170448_4	PHROG	phrog_31538	NA	unknown function
UHGV-0170448_4	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0170448_5	PHROG	phrog_1084	NA	unknown function
UHGV-0170448_5	eggNOG-mapper	665956.HMPREF1032_00696	NA	NA
UHGV-0170448_5	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0170448_7	PHROG	phrog_2427	NA	unknown function
UHGV-0170448_8	KOfam	K22656	IGSF9B; immunoglobulin superfamily member 9B	NA
UHGV-0170448_8	PHROG	phrog_1101	tail protein	tail
UHGV-0170448_8	UniRef90	UniRef90_R6X5E9	Phage-tail_3 domain-containing protein	NA
UHGV-0170448_8	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0170448_8	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0170448_8	COG	COG1511	NA	NA
UHGV-0170448_8	Structural annotation	PF13550, PF02010, MF_04116, NF040662, NF040520, COG4733	NA	NA
UHGV-0170448_9	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0170448_9	PHROG	phrog_329	minor tail protein	tail
UHGV-0170448_9	UniRef90	UniRef90_R6XZ04	Cell wall-associated hydrolase	NA
UHGV-0170448_9	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0170448_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0170448_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0170448_9	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0170448_10	PHROG	phrog_778	tail assembly protein	tail
UHGV-0170448_10	UniRef90	UniRef90_R6WK00	NA	NA
UHGV-0170448_10	eggNOG-mapper	436717.AOLE_14930	NA	NA
UHGV-0170448_10	Pfam	PF09931	NA	DUF2163
UHGV-0170448_10	COG	COG5449	NA	NA
UHGV-0170448_10	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0170448_11	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0170448_11	eggNOG-mapper	457415.HMPREF1006_00475	NA	NA
UHGV-0170448_11	Pfam	PF09343	NA	DUF2460
UHGV-0170448_11	COG	COG5448	NA	NA
UHGV-0170448_11	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0170448_12	PHROG	phrog_12798	NA	unknown function
UHGV-0170448_12	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0170448_12	eggNOG-mapper	457415.HMPREF1006_00474	tape measure	NA
UHGV-0170448_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0170448_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0170448_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0170448_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0170448_14	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0170448_14	Structural annotation	PF19591	NA	NA
UHGV-0170448_15	PHROG	phrog_1407	major tail protein	tail
UHGV-0170448_15	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0170448_15	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0170448_15	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0170448_15	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0170448_15	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0170448_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0170448_16	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0170448_16	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0170448_16	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0170448_17	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0170448_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0170448_18	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0170448_18	eggNOG-mapper	1000569.HMPREF1040_0194	Phage virion morphogenesis	NA
UHGV-0170448_18	COG	COG5005	NA	NA
UHGV-0170448_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0170448_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0170448_20	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0170448_20	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0170448_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0170448_21	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0170448_23	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0170448_23	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0170448_23	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0170448_24	PHROG	phrog_145	portal protein	head and packaging
UHGV-0170448_24	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0170448_24	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0170448_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0170448_25	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0170448_25	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0170448_25	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0170448_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0170448_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0170448_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0170448_25	COG	COG5410	NA	NA
UHGV-0170448_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0170448_26	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0170448_26	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0170448_27	eggNOG-mapper	768710.DesyoDRAFT_1097	NA	NA
UHGV-0170448_28	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0170448_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0170448_29	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0170448_29	eggNOG-mapper	1235799.C818_01032	NA	NA
UHGV-0170448_29	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0170448_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0170448_29	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0170448_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0170448_30	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0170448_30	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0170448_30	Pfam	PF06356	NA	DUF1064
UHGV-0170448_30	Structural annotation	PF06356	NA	NA
UHGV-0170448_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170448_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170448_32	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0170448_32	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0170448_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170448_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0170448_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170448_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0170448_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0170448_33	Structural annotation	NF011854	NA	NA
UHGV-0170448_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0170448_36	UniRef90	UniRef90_A0A6J7WC16	SaV-like	NA
UHGV-0170448_36	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0170448_36	Pfam	PF11753	NA	DUF3310
UHGV-0170448_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170448_40	eggNOG-mapper	1125712.HMPREF1316_1499	NA	NA
UHGV-0170448_41	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0170448_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0170448_41	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0170448_41	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0170448_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0170448_41	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0170448_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0170448_41	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0170448_42	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0170448_42	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0170448_42	eggNOG-mapper	1035189.HMPREF9954_1960	Replication initiation and membrane attachment	NA
UHGV-0170448_42	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0170448_42	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0170448_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0170448_42	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0170448_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0170448_43	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0170448_43	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0170448_44	PHROG	phrog_7566	NA	unknown function
UHGV-0170448_44	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0170448_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170448_45	UniRef90	UniRef90_UPI000E5CF8C1	ERF family protein	NA
UHGV-0170448_45	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0170448_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0170448_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0170448_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0170448_46	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0170448_46	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0170448_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0170448_46	Structural annotation	PF05565	NA	NA
UHGV-0170448_48	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0170448_48	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0170448_49	UniRef90	UniRef90_R6WX79	DNA binding domain excisionase family protein	NA
UHGV-0170448_49	eggNOG-mapper	318464.IO99_13850	Helix-turn-helix domain	NA
UHGV-0170448_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0170448_49	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0170448_52	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170448_52	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0170448_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170448_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0170448_53	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-0170448_53	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0170448_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170448_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170448_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0170448_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0170448_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0170448_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170448_54	UniRef90	UniRef90_H3K591	HTH cro/C1-type domain-containing protein	NA
UHGV-0170448_54	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0170448_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170448_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0170448_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0170448_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0170448_55	UniRef90	UniRef90_A0A120KRD9	HTH cro/C1-type domain-containing protein	NA
UHGV-0170448_55	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0170448_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0170448_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170448_55	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0170448_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0170448_56	PHROG	phrog_19315	NA	unknown function
UHGV-0170448_56	UniRef90	UniRef90_A0A4P6BJ23	Peptidase_M78 domain-containing protein	NA
UHGV-0170448_56	eggNOG-mapper	386415.NT01CX_2202	NA	NA
UHGV-0170448_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0170448_56	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0170448_56	COG	COG1592	Rubrerythrin	NA
UHGV-0170448_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0170448_57	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0170448_57	PHROG	phrog_8036	NA	unknown function
UHGV-0170448_57	UniRef90	UniRef90_A0A3C1INR2	Damage-inducible protein D	NA
UHGV-0170448_57	eggNOG-mapper	340.xcc-b100_1250	BRO family, N-terminal domain	NA
UHGV-0170448_57	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0170448_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0170448_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0170448_57	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0170448_58	PHROG	phrog_2232	NA	unknown function
UHGV-0170448_58	UniRef90	UniRef90_UPI0009C05AB2	NA	NA
UHGV-0170448_58	eggNOG-mapper	1111454.HMPREF1250_0026	NA	NA
UHGV-0170448_58	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0170448_58	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0170448_60	KOfam	K14059	int; integrase	NA
UHGV-0170448_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0170448_60	UniRef90	UniRef90_R6X5Q1	Prophage LambdaBa02 site-specific recombinase phage integrase family	NA
UHGV-0170448_60	eggNOG-mapper	478749.BRYFOR_07566	Belongs to the 'phage' integrase family	NA
UHGV-0170448_60	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0170448_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0170448_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0170448_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0170448_60	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA