UHGV-0170564

Genome information

Genome length 56,476 bps

CDS count 95

Completeness 84.75% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0170564
vOTU ID	vOTU-022409
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_501965
BioSample	SAMN06110338
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.73
Jumbo phage	No

Genome content
Genome length	56,476 bps
GC content	55.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	90.34%
Average CDS length	540.00 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0170564_1	PHROG	phrog_9994	NA	unknown function
UHGV-0170564_1	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0170564_1	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0170564_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0170564_3	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0170564_3	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0170564_3	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0170564_4	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0170564_4	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0170564_4	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0170564_5	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0170564_5	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-0170564_5	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0170564_5	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0170564_7	PHROG	phrog_36579	NA	unknown function
UHGV-0170564_8	PHROG	phrog_117	major tail protein	tail
UHGV-0170564_8	UniRef90	UniRef90_A0A087AF65	Gp22	NA
UHGV-0170564_8	eggNOG-mapper	35760.BCHO_0834	NA	NA
UHGV-0170564_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0170564_9	eggNOG-mapper	35760.BCHO_0835	NA	NA
UHGV-0170564_9	Structural annotation	PF12691	NA	NA
UHGV-0170564_10	PHROG	phrog_32608	NA	unknown function
UHGV-0170564_10	Structural annotation	PF17395	NA	NA
UHGV-0170564_11	PHROG	phrog_25853	NA	unknown function
UHGV-0170564_11	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0170564_11	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-0170564_11	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0170564_12	PHROG	phrog_36776	NA	unknown function
UHGV-0170564_12	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0170564_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-0170564_13	UniRef90	UniRef90_UPI0018C2985B	major capsid protein	NA
UHGV-0170564_13	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0170564_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0170564_13	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0170564_14	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0170564_14	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0170564_14	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0170564_14	Structural annotation	PF02924	NA	NA
UHGV-0170564_15	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-0170564_15	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0170564_16	PHROG	phrog_36668	NA	unknown function
UHGV-0170564_16	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0170564_16	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0170564_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0170564_17	PHROG	phrog_104	portal protein	head and packaging
UHGV-0170564_17	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-0170564_17	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0170564_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0170564_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0170564_18	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0170564_18	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0170564_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0170564_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0170564_19	PHROG	phrog_226	minor tail protein	tail
UHGV-0170564_20	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170564_20	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-0170564_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170564_20	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0170564_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0170564_21	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0170564_21	UniRef90	UniRef90_A0A0A7I6T1	HNHc domain-containing protein	NA
UHGV-0170564_21	eggNOG-mapper	1386089.N865_02065	HNH nucleases	NA
UHGV-0170564_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0170564_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0170564_32	eggNOG-mapper	445975.COLSTE_02319	NA	NA
UHGV-0170564_35	UniRef90	UniRef90_A0A1X2Z130	XRE family transcriptional regulator	NA
UHGV-0170564_35	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0170564_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0170564_35	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0170564_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0170564_36	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0170564_36	UniRef90	UniRef90_A0A1X2Z7T9	HTH cro/C1-type domain-containing protein	NA
UHGV-0170564_36	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-0170564_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170564_36	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0170564_37	PHROG	phrog_14333	NA	unknown function
UHGV-0170564_37	UniRef90	UniRef90_A0A6I1GPA6	Transcriptional regulator	NA
UHGV-0170564_37	eggNOG-mapper	547043.BIFPSEUDO_03942	NA	NA
UHGV-0170564_37	Pfam	PF13711	NA	DUF4160
UHGV-0170564_37	Structural annotation	PF13711	NA	NA
UHGV-0170564_38	PHROG	phrog_37898	NA	unknown function
UHGV-0170564_38	UniRef90	UniRef90_A0A2U2MTW0	NA	NA
UHGV-0170564_38	eggNOG-mapper	702459.BBPR_0014	NA	NA
UHGV-0170564_38	Pfam	PF10387	NA	DUF2442
UHGV-0170564_40	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0170564_40	PHROG	phrog_2577	transposase	integration and excision
UHGV-0170564_40	UniRef90	UniRef90_A0A3E4S6G1	IS200/IS605 family transposase	NA
UHGV-0170564_40	eggNOG-mapper	547043.BIFPSEUDO_03173	Transposase IS200 like	NA
UHGV-0170564_40	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0170564_40	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0170564_40	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0170564_40	Structural annotation	PF01797, MF_01450, NF033573, COG1943	NA	NA
UHGV-0170564_41	KOfam	K07496	K07496; putative transposase	NA
UHGV-0170564_41	PHROG	phrog_506	transposase	integration and excision
UHGV-0170564_41	UniRef90	UniRef90_I3BFP8	Transposase, IS605 family	NA
UHGV-0170564_41	eggNOG-mapper	547043.BIFPSEUDO_03172	NA	NA
UHGV-0170564_41	PADLOC	V_U4	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0170564_41	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0170564_41	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0170564_41	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0170564_41	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0170564_41	COG	COG0675	Transposase	NA
UHGV-0170564_41	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0170564_42	PHROG	phrog_547	phosphoesterase	other
UHGV-0170564_42	UniRef90	UniRef90_A0A1X2Z7T2	Metallophosphatase	NA
UHGV-0170564_42	eggNOG-mapper	1437600.JDUI01000008_gene1252	phosphoesterase or phosphohydrolase	NA
UHGV-0170564_42	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0170564_42	COG	COG4186	NA	NA
UHGV-0170564_42	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-0170564_45	Structural annotation	PF20760	NA	NA
UHGV-0170564_49	PHROG	phrog_908	NA	unknown function
UHGV-0170564_49	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0170564_50	Structural annotation	PF13384	NA	NA
UHGV-0170564_52	PHROG	phrog_3641	NA	unknown function
UHGV-0170564_54	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0170564_54	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0170564_56	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-0170564_57	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0170564_57	UniRef90	UniRef90_A0A2R4G2L6	Class I SAM-dependent methyltransferase	NA
UHGV-0170564_57	eggNOG-mapper	1115632.JAFW01000001_gene426	tRNA (guanine-N2-)-methyltransferase activity	NA
UHGV-0170564_57	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0170564_57	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0170564_57	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0170564_57	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0170564_59	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0170564_59	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0170564_59	Structural annotation	PF01815	NA	NA
UHGV-0170564_62	Structural annotation	TIGR03655	NA	NA
UHGV-0170564_64	PHROG	phrog_21331	NA	unknown function
UHGV-0170564_64	UniRef90	UniRef90_A0A0A7I3Q2	Peptidase	NA
UHGV-0170564_69	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-0170564_70	PHROG	phrog_236	nucleotide kinase	other
UHGV-0170564_70	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-0170564_70	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-0170564_70	Pfam	PF11753	NA	DUF3310
UHGV-0170564_73	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0170564_73	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0170564_73	UniRef90	UniRef90_R6P7Q1	dUTPase domain-containing protein	NA
UHGV-0170564_73	eggNOG-mapper	1151126.AQYI01000003_gene554	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0170564_73	Pfam	PF00692	dUTPase	dUTPase
UHGV-0170564_73	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0170564_73	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0170564_73	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0170564_74	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0170564_74	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-0170564_74	eggNOG-mapper	1688.BCUN_0417	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0170564_74	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0170564_74	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-0170564_75	eggNOG-mapper	1394176.AWUO01000014_gene674	NA	NA
UHGV-0170564_76	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0170564_76	eggNOG-mapper	1437610.BREU_1410	NA	NA
UHGV-0170564_78	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0170564_78	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0170564_78	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0170564_78	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0170564_79	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0170564_79	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0170564_79	UniRef90	UniRef90_R6NTI6	Single-stranded DNA-binding protein	NA
UHGV-0170564_79	eggNOG-mapper	1680.BADO_1267	Single-strand binding protein family	NA
UHGV-0170564_79	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0170564_79	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0170564_79	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0170564_82	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0170564_82	UniRef90	UniRef90_A0A0A7I2H6	Phage recombination protein Bet	NA
UHGV-0170564_82	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0170564_82	Pfam	PF03837	RecT family	RecT
UHGV-0170564_82	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0170564_82	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0170564_82	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0170564_83	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0170564_84	KOfam	K04074	divIVA; cell division initiation protein	NA
UHGV-0170564_84	UniRef90	UniRef90_A0A564VUN2	Cell wall synthesis protein Wag31	NA
UHGV-0170564_84	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-0170564_84	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0170564_84	COG	COG1566	Multidrug resistance efflux pump EmrA	NA
UHGV-0170564_84	Structural annotation	PF05103, MF_02011, NF010725	NA	NA
UHGV-0170564_86	PHROG	phrog_774	NA	unknown function
UHGV-0170564_88	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0170564_88	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-0170564_88	UniRef90	UniRef90_A0A1X2ZGV6	Antirepressor	NA
UHGV-0170564_88	eggNOG-mapper	566552.BIFCAT_00893	P22_AR N-terminal domain	NA
UHGV-0170564_88	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0170564_88	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0170564_88	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0170564_88	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-0170564_89	UniRef90	UniRef90_W4N9K9	Phosphoglycerate dehydrogenase	NA
UHGV-0170564_89	eggNOG-mapper	566552.BIFCAT_00894	NA	NA
UHGV-0170564_90	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0170564_90	PHROG	phrog_9562	NA	unknown function
UHGV-0170564_90	UniRef90	UniRef90_A7A2N4	Pentapeptide repeat protein	NA
UHGV-0170564_90	eggNOG-mapper	1235799.C818_02571	Pentapeptide repeats (9 copies)	NA
UHGV-0170564_90	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0170564_90	Pfam	PF19062	NA	DUF5758
UHGV-0170564_90	COG	COG1357	NA	NA
UHGV-0170564_90	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0170564_91	UniRef90	UniRef90_A0A1X3A205	HTH cro/C1-type domain-containing protein	NA
UHGV-0170564_91	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0170564_91	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0170564_91	Structural annotation	PF08667, MF_00535, NF041951, COG3655	NA	NA
UHGV-0170564_92	UniRef90	UniRef90_UPI001F51007C	helix-turn-helix transcriptional regulator	NA
UHGV-0170564_93	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0170564_93	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0170564_93	UniRef90	UniRef90_A0A1X3A1Y7	DNA polymerase III subunit alpha	NA
UHGV-0170564_93	eggNOG-mapper	269800.Tfu_0902	EXOIII	NA
UHGV-0170564_93	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0170564_93	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0170564_93	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0170564_93	Structural annotation	PF00929, MF_00157, TIGR01298, COG0847	NA	NA
UHGV-0170564_95	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0170564_95	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0170564_95	UniRef90	UniRef90_A0A564VW46	Thymidylate synthase	NA
UHGV-0170564_95	eggNOG-mapper	1240349.ANGC01000001_gene2516	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0170564_95	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0170564_95	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-0170564_95	COG	COG0207	Thymidylate synthase	NA
UHGV-0170564_95	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-0170564_95	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA